Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30752 Brassica carinata HOM05D007494 ORTHO05D009621 1.9e-228 795.4 379 100.0
BcaC07g39053 Brassica carinata HOM05D007494 ORTHO05D009621 1.0e-189 666.8 380 83.9
C08p20370 Brassica napus HOM05D007494 ORTHO05D009621 1.6e-187 659.4 380 82.9
BolC8t49665H Brassica oleracea HOM05D007494 ORTHO05D009621 1.6e-187 659.4 380 82.9
BcaB03g12853 Brassica carinata HOM05D007494 ORTHO05D009621 1.4e-186 656.4 379 82.1
BcaB03g13899 Brassica carinata HOM05D007494 ORTHO05D009621 2.4e-175 619.0 379 79.7
A08p29250 Brassica napus HOM05D007494 ORTHO05D009621 3.8e-173 611.7 379 77.6
BraA08t34860Z Brassica rapa HOM05D007494 ORTHO05D009621 1.1e-172 610.1 379 77.3
BcaB02g08200 Brassica carinata HOM05D007494 ORTHO05D009621 2.7e-158 562.4 379 74.1
Sp1g18490 Schrenkiella parvula HOM05D007494 ORTHO05D009621 5.3e-114 415.2 382 54.7
Thhalv10015953m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.5e-103 379.8 378 52.1
Thhalv10009430m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.2e-102 377.5 383 49.9
AT1G20790 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.6e-97 359.8 352 53.7
AL1G33790 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.1e-84 317.8 368 46.2
AL5G30530 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.2e-80 303.5 393 45.8
Thhalv10011090m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.1e-79 301.2 370 43.5
AL1G67140 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 5.5e-79 298.9 362 44.8
Carub.0001s2024 Capsella rubella HOM05D007494 ORTHO05D009621 4.7e-78 295.8 368 44.0
A09p43410 Brassica napus HOM05D007494 ORTHO05D009621 1.5e-76 290.8 354 44.4
BraA09t39811Z Brassica rapa HOM05D007494 ORTHO05D009621 2.0e-76 290.4 346 43.9
BraA09t39810Z Brassica rapa HOM05D007494 ORTHO05D009621 5.7e-76 288.9 383 42.3
C08p25460 Brassica napus HOM05D007494 ORTHO05D009621 2.2e-75 287.0 350 43.1
Thhalv10012024m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.1e-74 284.6 315 46.3
BcaB01g00617 Brassica carinata HOM05D007494 ORTHO05D009621 2.4e-74 283.5 359 42.3
BcaC07g39504 Brassica carinata HOM05D007494 ORTHO05D009621 9.1e-74 281.6 346 43.1
C08p25490 Brassica napus HOM05D007494 ORTHO05D009621 9.1e-74 281.6 346 43.1
C08p25440 Brassica napus HOM05D007494 ORTHO05D009621 7.7e-73 278.5 366 40.7
AT1G20795 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 1.0e-72 278.1 362 43.4
BcaC07g39499 Brassica carinata HOM05D007494 ORTHO05D009621 3.8e-72 276.2 356 41.0
AT1G57580 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.7e-70 270.0 394 39.6
Sp5g11780 Schrenkiella parvula HOM05D007494 ORTHO05D009621 3.5e-65 253.1 284 46.5
THA.LOC104813281 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 4.7e-62 242.7 386 35.5
AT1G20940 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 3.4e-60 236.5 375 38.1
A03p18740 Brassica napus HOM05D007494 ORTHO05D009621 9.2e-58 228.4 362 39.0
BraA03t11134Z Brassica rapa HOM05D007494 ORTHO05D009621 5.9e-57 225.7 359 39.3
AL1G45220 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.9e-56 223.4 371 37.5
BolC8t50168H Brassica oleracea HOM05D007494 ORTHO05D009621 1.1e-55 221.5 345 36.2
AL1G33970 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.0e-53 214.9 346 38.7
Thhalv10012236m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.8e-53 214.2 322 37.0
AT1G20800 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.3e-53 213.8 348 37.4
Thhalv10012172m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 4.0e-53 213.0 378 34.4
Aa31LG7G4950 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.2e-52 211.5 377 35.8
C08p21040 Brassica napus HOM05D007494 ORTHO05D009621 4.4e-52 209.5 372 37.6
THA.LOC104813247 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 7.5e-52 208.8 358 36.3
AL1G33230 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 9.8e-52 208.4 380 37.1
AT1G20360 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.3e-51 205.3 295 44.1
AT1G20735 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 8.3e-51 205.3 383 38.1
BolC8t49740H Brassica oleracea HOM05D007494 ORTHO05D009621 8.3e-51 205.3 373 37.5
Thhalv10012123m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 8.3e-51 205.3 268 41.4
Thhalv10011940m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 2.4e-50 203.8 322 37.0
BraA08t34811Z Brassica rapa HOM05D007494 ORTHO05D009621 3.2e-50 203.4 361 38.0
BcaC07g39120 Brassica carinata HOM05D007494 ORTHO05D009621 2.0e-49 200.7 375 36.8
Carub.0001s2025 Capsella rubella HOM05D007494 ORTHO05D009621 6.6e-48 195.7 353 36.8
AT1G20240 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 5.6e-47 192.6 276 38.8
A09p43390 Brassica napus HOM05D007494 ORTHO05D009621 7.3e-47 192.2 197 46.7
BcaB03g11879 Brassica carinata HOM05D007494 ORTHO05D009621 1.6e-46 191.0 373 34.6
BcaB03g12780 Brassica carinata HOM05D007494 ORTHO05D009621 2.1e-46 190.7 375 34.4
Carub.0005s1178 Capsella rubella HOM05D007494 ORTHO05D009621 4.7e-46 189.5 358 35.5
Carub.0004s0895 Capsella rubella HOM05D007494 ORTHO05D009621 1.8e-45 187.6 357 37.0
AT1G57565 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.3e-45 187.2 158 53.2
Carub.0001s2057 Capsella rubella HOM05D007494 ORTHO05D009621 4.0e-45 186.4 386 33.7
BolC8t50169H Brassica oleracea HOM05D007494 ORTHO05D009621 1.2e-44 184.9 249 43.4
Aa31LG7G4960 Aethionema arabicum HOM05D007494 ORTHO05D009621 2.6e-44 183.7 370 32.4
BolC8t49745H Brassica oleracea HOM05D007494 ORTHO05D009621 1.7e-43 181.0 317 37.9
BolC8t50166H Brassica oleracea HOM05D007494 ORTHO05D009621 1.3e-40 171.4 309 33.7
Carub.0001s1977 Capsella rubella HOM05D007494 ORTHO05D009621 6.6e-40 169.1 277 39.7
Aa31LG8G15360 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.1e-39 168.3 324 35.2
THA.LOC104813248 Tarenaya hassleriana HOM05D007494 ORTHO05D009621 1.1e-39 168.3 361 33.5
A09p43460 Brassica napus HOM05D007494 ORTHO05D009621 8.9e-37 158.7 261 35.6
Aa31LG8G15370 Aethionema arabicum HOM05D007494 ORTHO05D009621 1.5e-36 157.9 339 33.0
CARHR020740 Cardamine hirsuta HOM05D007494 ORTHO05D009621 1.5e-36 157.9 272 36.8
Thhalv10012136m.g Eutrema salsugineum HOM05D007494 ORTHO05D009621 1.5e-36 157.9 297 31.6
AT1G20690 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 2.0e-36 157.5 190 43.7
C08p21030 Brassica napus HOM05D007494 ORTHO05D009621 4.4e-36 156.4 260 39.6
BcaC07g39500 Brassica carinata HOM05D007494 ORTHO05D009621 9.9e-36 155.2 156 46.2
BcaC07g39502 Brassica carinata HOM05D007494 ORTHO05D009621 1.3e-32 144.8 194 41.8
C08p25470 Brassica napus HOM05D007494 ORTHO05D009621 1.3e-32 144.8 194 41.8
A08p28830 Brassica napus HOM05D007494 ORTHO05D009621 1.1e-31 141.7 219 40.6
BcaB01g00618 Brassica carinata HOM05D007494 ORTHO05D009621 7.3e-31 139.0 190 44.7
BcaC07g39114 Brassica carinata HOM05D007494 ORTHO05D009621 6.2e-30 136.0 343 32.1
AL1G33090 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 2.4e-26 124.0 191 40.8
QL02p015450 Quercus lobata HOM05D007494 ORTHO05D009621 2.1e-25 120.9 362 29.0
Sp1g18390 Schrenkiella parvula HOM05D007494 ORTHO05D009621 6.0e-25 119.4 157 42.0
AT1G20290 Arabidopsis thaliana HOM05D007494 ORTHO05D009621 6.2e-22 109.4 185 38.9
Duzib041G0294 Durio zibethinus HOM05D007494 ORTHO05D009621 3.2e-18 97.1 329 28.0
CAN.G1631.3 Capsicum annuum HOM05D008697 ORTHO05D010866 1.0e-16 92.0 356 27.0
A09p43420 Brassica napus HOM05D007494 ORTHO05D009621 3.0e-16 90.5 99 43.4
BraA09t39809Z Brassica rapa HOM05D007494 ORTHO05D009621 3.0e-16 90.5 102 42.2
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 3.0e-16 90.5 358 27.4
BraA09t39808Z Brassica rapa HOM05D007494 ORTHO05D009621 1.5e-15 88.2 112 40.2
Aa31LG8G15340 Aethionema arabicum HOM05D007494 ORTHO05D009621 7.3e-15 85.9 170 36.5
CAN.G1631.2 Capsicum annuum HOM05D008697 ORTHO05D010866 1.1e-13 82.0 290 28.3
AL1G32830 Arabidopsis lyrata HOM05D007494 ORTHO05D009621 1.2e-12 78.6 68 57.4
PGSC0003DMG400015217 Solanum tuberosum HOM05D008697 ORTHO05D010866 1.2e-12 78.6 269 25.3
Sopen03g029630 Solanum pennellii HOM05D008697 ORTHO05D010923 2.0e-12 77.8 354 24.3
Aa31LG8G15320 Aethionema arabicum HOM05D007494 ORTHO05D009621 4.9e-11 73.2 92 43.5
Nitab4.5_0005200g0080 Nicotiana tabacum HOM05D008697 ORTHO05D010866 4.9e-11 73.2 249 26.5
CAN.G1909.14 Capsicum annuum HOM05D008697 ORTHO05D010866 6.4e-11 72.8 290 25.9
AL8G44280 Arabidopsis lyrata HOM05D000015 ORTHO05D000734 5.4e-10 69.7 86 45.3
MELO3C010232.2 Cucumis melo HOM05D002420 ORTHO05D002422 9.3e-10 68.9 281 24.2
PGSC0003DMG400025634 Solanum tuberosum HOM05D008697 ORTHO05D010866 1.2e-09 68.6 335 25.1
Oeu008441.1 Olea europaea HOM05D008697 ORTHO05D010866 4.6e-09 66.6 192 25.5
PGSC0003DMG400015282 Solanum tuberosum HOM05D008697 ORTHO05D010866 6.0e-09 66.2 358 24.0
BcaC07g39503 Brassica carinata HOM05D007494 ORTHO05D032917 5.1e-08 63.2 93 36.6
C08p25480 Brassica napus HOM05D007494 ORTHO05D032917 5.1e-08 63.2 93 36.6
C08p21080 Brassica napus HOM05D007494 ORTHO05D009621 8.7e-08 62.4 120 35.8
CsaV3_1G028850 Cucumis sativus L. HOM05D002420 ORTHO05D002422 1.5e-07 61.6 283 23.7
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 1.9e-07 61.2 194 24.2
Peaxi162Scf00001g00056 Petunia axillaris HOM05D008697 ORTHO05D010866 1.9e-07 61.2 138 26.1
Thecc.08G063600 Theobroma cacao HOM05D007494 ORTHO05D009621 1.9e-07 61.2 100 34.0
CsaV3_1G024340 Cucumis sativus L. HOM05D002420 ORTHO05D002422 2.5e-07 60.8 283 23.7
Sopen03g029650 Solanum pennellii HOM05D008697 ORTHO05D010866 4.3e-07 60.1 282 23.0
AL1G33800 Arabidopsis lyrata HOM05D013746 ORTHO05D015945 5.6e-07 59.7 47 53.2
PGSC0003DMG400015218 Solanum tuberosum HOM05D008697 ORTHO05D010923 5.6e-07 59.7 253 26.1
Aqoxy5G01482 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 3.7e-06 57.0 267 21.3


User provided reference genes

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