Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 4.8e-54 214.2 101 100.0
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 2.2e-43 178.7 113 77.0
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 6.5e-43 177.2 113 76.1
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 4.6e-41 171.0 113 72.6
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 4.6e-41 171.0 113 72.6
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.3e-40 169.5 111 73.0
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.8e-40 169.1 113 71.7
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.8e-40 169.1 113 71.7
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.8e-40 169.1 113 71.7
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 2.3e-40 168.7 110 72.7
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 3.9e-40 167.9 110 71.8
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 3.9e-40 167.9 113 70.8
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 7.4e-39 163.7 96 78.1
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 7.4e-39 163.7 110 70.9
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.1e-38 162.2 110 69.1
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 1.1e-37 159.8 113 71.7
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.8e-37 159.1 111 65.8
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 6.9e-37 157.1 111 64.9
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 9.0e-37 156.8 113 69.9
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 3.4e-36 154.8 99 76.8
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 5.9e-36 154.1 111 63.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 2.9e-35 151.8 111 62.2
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 2.9e-35 151.8 111 62.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 5.0e-35 151.0 111 64.0
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 6.5e-35 150.6 110 63.6
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 8.4e-35 150.2 110 61.8
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.1e-34 149.8 113 61.1
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 1.4e-34 149.4 110 62.7
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.9e-34 149.1 110 61.8
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 2.5e-34 148.7 110 60.9
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 2.5e-34 148.7 91 70.3
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 3.2e-34 148.3 110 61.8
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 3.2e-34 148.3 110 60.0
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 4.2e-34 147.9 111 61.3
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 4.2e-34 147.9 111 60.4
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 4.2e-34 147.9 111 60.4
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 4.2e-34 147.9 111 61.3
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 5.5e-34 147.5 110 61.8
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 7.2e-34 147.1 111 62.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 7.2e-34 147.1 110 61.8
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 9.3e-34 146.7 110 61.8
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 9.3e-34 146.7 110 61.8
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.2e-33 146.4 110 60.9
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.1e-33 145.6 110 60.0
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 2.7e-33 145.2 110 60.0
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 2.7e-33 145.2 110 60.9
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 3.5e-33 144.8 78 84.6
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 3.5e-33 144.8 111 61.3
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 3.5e-33 144.8 111 60.4
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 3.5e-33 144.8 111 60.4
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 4.6e-33 144.4 110 59.1
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 4.6e-33 144.4 110 59.1
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 4.6e-33 144.4 111 61.3
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 4.6e-33 144.4 111 59.5
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 4.6e-33 144.4 111 60.4
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 4.6e-33 144.4 111 60.4
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.1e-33 144.1 110 58.2
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 7.9e-33 143.7 110 60.0
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 7.9e-33 143.7 110 60.9
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.0e-32 143.3 78 83.3
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.0e-32 143.3 110 60.9
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.3e-32 142.9 110 58.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.3e-32 142.9 99 61.6
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.8e-32 142.5 110 59.1
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.8e-32 142.5 110 58.2
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.8e-32 142.5 110 58.2
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.8e-32 142.5 110 60.0
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 2.3e-32 142.1 111 59.5
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 2.3e-32 142.1 110 58.2
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.0e-32 141.7 110 60.0
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 3.9e-32 141.4 110 58.2
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.9e-32 141.4 110 60.0
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 5.1e-32 141.0 110 61.8
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 6.7e-32 140.6 110 58.2
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 6.7e-32 140.6 110 59.1
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 8.7e-32 140.2 110 57.3
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.1e-31 139.8 110 59.1
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.1e-31 139.8 111 58.6
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.1e-31 139.8 111 58.6
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 1.5e-31 139.4 111 57.7
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.5e-31 139.4 110 58.2
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.9e-31 139.0 110 59.1
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.9e-31 139.0 110 59.1
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.9e-31 139.0 110 58.2
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.5e-31 138.7 110 58.2
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 2.5e-31 138.7 110 56.4
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 5.7e-31 137.5 110 58.2
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 9.7e-31 136.7 110 56.4
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.3e-30 136.3 110 57.3
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.8e-30 135.2 110 55.5
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 6.3e-30 134.0 110 55.5
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.4e-29 132.9 110 54.5
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.8e-29 132.5 99 60.6
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 5.3e-29 131.0 110 56.4
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.2e-28 129.8 110 52.7
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 1.5e-28 129.4 118 54.2
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 2.0e-28 129.0 99 60.6
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 2.0e-28 129.0 105 55.2
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 5.9e-28 127.5 110 50.9
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.7e-27 125.9 100 58.0
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 1.7e-27 125.9 110 55.5
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 6.5e-27 124.0 98 59.2
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 8.5e-27 123.6 99 57.6
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.9e-26 122.5 98 59.2
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 3.2e-26 121.7 98 57.1
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.6e-25 119.4 108 50.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.6e-25 119.4 106 52.8
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.1e-25 119.0 99 54.5
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 6.1e-25 117.5 99 54.5
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 1.8e-24 115.9 77 66.2
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.8e-24 115.9 99 53.5
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 1.8e-24 115.9 83 56.6
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 3.9e-24 114.8 99 53.5
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 8.8e-24 113.6 100 53.0
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.0e-23 112.5 110 45.5
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 3.3e-23 111.7 110 44.5
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.8e-21 105.9 72 59.7
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.8e-21 105.9 72 59.7
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 3.4e-20 101.7 113 46.0
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.7e-19 99.4 83 47.0
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 2.2e-19 99.0 111 45.9
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.2e-17 93.2 99 48.5
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.4e-16 89.7 129 40.3
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 3.7e-14 81.6 74 52.7
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.4e-13 79.7 93 43.0
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 5.3e-13 77.8 130 39.2
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 4.5e-12 74.7 69 52.2
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 3.8e-11 71.6 104 38.5
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 8.0e-09 63.9 48 58.3
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.4e-08 63.2 92 34.8


User provided reference genes

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