Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30724 Brassica carinata HOM05D010619 ORTHO05D009830 8.8e-78 293.5 144 100.0
C09p30500 Brassica napus HOM05D010619 ORTHO05D009830 1.5e-69 266.2 145 92.4
BcaC04g21548 Brassica carinata HOM05D010619 ORTHO05D009830 4.4e-69 264.6 145 91.7
BolC9t55912H Brassica oleracea HOM05D010619 ORTHO05D009830 1.7e-68 262.7 145 91.0
A09p23610 Brassica napus HOM05D010619 ORTHO05D009830 2.2e-68 262.3 145 90.3
BraA09t37965Z Brassica rapa HOM05D010619 ORTHO05D009830 2.2e-68 262.3 145 90.3
Thhalv10005091m.g Eutrema salsugineum HOM05D010619 ORTHO05D009830 2.7e-58 228.8 144 77.8
CARHR144510 Cardamine hirsuta HOM05D010619 ORTHO05D009830 2.1e-55 219.2 147 78.2
AL5G11040 Arabidopsis lyrata HOM05D010619 ORTHO05D009830 2.8e-55 218.8 146 78.8
Sp2g13350 Schrenkiella parvula HOM05D010619 ORTHO05D009830 2.3e-54 215.7 144 79.2
BcaC06g31262 Brassica carinata HOM05D010619 ORTHO05D009830 3.0e-54 215.3 145 75.2
BraA06t27268Z Brassica rapa HOM05D010619 ORTHO05D009830 3.0e-54 215.3 145 75.2
BcaC06g34096 Brassica carinata HOM05D010619 ORTHO05D009830 5.2e-54 214.5 146 77.4
BolC7t43793H Brassica oleracea HOM05D010619 ORTHO05D009830 1.2e-53 213.4 144 77.8
C07p32760 Brassica napus HOM05D010619 ORTHO05D009830 1.5e-53 213.0 146 76.7
A06p43920 Brassica napus HOM05D010619 ORTHO05D009830 4.6e-50 201.4 144 70.8
AT2G01913 Arabidopsis thaliana HOM05D010619 ORTHO05D009830 1.5e-48 196.4 146 73.3
Carub.0005s0092 Capsella rubella HOM05D010619 ORTHO05D009830 1.3e-33 146.7 130 63.8
Aa31LG2G7990 Aethionema arabicum HOM05D010619 ORTHO05D009830 1.7e-28 129.8 146 54.1
THA.LOC104805100 Tarenaya hassleriana HOM05D010619 ORTHO05D009830 1.7e-17 93.2 147 44.2
Manes.15G138900 Manihot esculenta HOM05D008187 ORTHO05D009830 4.6e-10 68.6 127 35.4
Lsat_1_v5_gn_4_24181 Lactuca sativa HOM05D008187 ORTHO05D009830 1.0e-09 67.4 132 34.1
Thecc.02G303500 Theobroma cacao HOM05D008187 ORTHO05D009830 3.0e-09 65.9 132 34.1
Ciclev10016789m.g Citrus clementina HOM05D008187 ORTHO05D009830 1.1e-08 63.9 136 33.1
Atru.chr11.1001 Acer truncatum HOM05D008187 ORTHO05D009830 1.5e-08 63.5 127 35.4
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 1.5e-08 63.5 123 34.1
Sabra10G0074300 Salix brachista HOM05D008187 ORTHO05D009830 1.9e-08 63.2 133 32.3
Sabra08G0106100 Salix brachista HOM05D008187 ORTHO05D009830 2.5e-08 62.8 130 30.0
Potri.010G101500 Populus trichocarpa HOM05D008187 ORTHO05D009830 3.3e-08 62.4 136 32.4
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 5.6e-08 61.6 147 34.0
Manes.17G089700 Manihot esculenta HOM05D008187 ORTHO05D009830 5.6e-08 61.6 138 29.7
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 7.4e-08 61.2 141 34.8
Potri.008G140000 Populus trichocarpa HOM05D008187 ORTHO05D009830 9.6e-08 60.8 135 30.4
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 1.3e-07 60.5 128 31.2
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 1.3e-07 60.5 150 34.0
QL03p039185 Quercus lobata HOM05D008187 ORTHO05D009830 1.3e-07 60.5 147 29.9
arahy.Tifrunner.gnm1.ann1.FUMC5T Arachis hypogaea HOM05D008187 ORTHO05D009830 1.6e-07 60.1 159 28.9
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 2.1e-07 59.7 123 32.5
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 3.7e-07 58.9 150 33.3
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 3.7e-07 58.9 140 34.3
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 3.7e-07 58.9 141 34.0
arahy.Tifrunner.gnm1.ann1.61TZTK Arachis hypogaea HOM05D008187 ORTHO05D009830 4.8e-07 58.5 128 31.2
COL.COLO4_27577 Corchorus olitorius HOM05D008187 ORTHO05D009830 4.8e-07 58.5 122 36.1
FvH4_4g26140 Fragaria vesca HOM05D008187 ORTHO05D009830 4.8e-07 58.5 126 34.1
CiPaw.06G058400 Carya illinoinensis HOM05D008187 ORTHO05D009830 6.2e-07 58.2 124 36.3
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 8.1e-07 57.8 135 29.6
Sed0002824 Sechium edule HOM05D008187 ORTHO05D009830 8.1e-07 57.8 142 33.1
CiPaw.05G158900 Carya illinoinensis HOM05D008187 ORTHO05D009830 1.1e-06 57.4 127 33.1
FAN12G2367 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.1e-06 57.4 126 34.1
FAN12G2898 Fragaria x ananassa HOM05D008187 ORTHO05D009830 1.1e-06 57.4 126 34.1
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 1.1e-06 57.4 136 32.4
MELO3C020063.2 Cucumis melo HOM05D008187 ORTHO05D009830 1.4e-06 57.0 124 34.7
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 3.1e-06 55.8 139 30.9
FAN07G0781 Fragaria x ananassa HOM05D008187 ORTHO05D009830 4.0e-06 55.5 144 31.9
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 5.3e-06 55.1 135 30.4
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 5.3e-06 55.1 135 30.4
CANSAT78G2356 Cannabis sativa HOM05D008187 ORTHO05D009830 9.0e-06 54.3 135 31.9
FAN17G0865 Fragaria x ananassa HOM05D008187 ORTHO05D009830 9.0e-06 54.3 144 31.9


User provided reference genes

Program Settings