Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 1.8e-47 192.2 95 100.0
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 1.8e-47 192.2 95 100.0
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 7.2e-44 180.3 90 96.7
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 7.2e-44 180.3 93 93.5
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 7.2e-44 180.3 93 93.5
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 7.2e-44 180.3 93 93.5
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 7.2e-44 180.3 93 93.5
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 7.2e-44 180.3 93 93.5
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 7.2e-44 180.3 93 93.5
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 1.2e-43 179.5 93 92.5
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 1.2e-43 179.5 93 92.5
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 1.6e-43 179.1 90 95.6
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 1.6e-43 179.1 90 95.6
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 1.6e-43 179.1 93 92.5
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 3.6e-43 177.9 93 92.5
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 3.6e-43 177.9 93 92.5
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 3.6e-43 177.9 93 92.5
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 1.8e-42 175.6 91 93.4
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 3.9e-42 174.5 93 90.3
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 4.4e-41 171.0 92 90.2
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 2.2e-40 168.7 93 87.1
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 1.1e-39 166.4 93 86.0
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 3.1e-39 164.9 92 87.0
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 5.3e-39 164.1 93 84.9
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 4.5e-38 161.0 94 81.9
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 7.7e-38 160.2 89 86.5
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 7.7e-38 160.2 91 84.6
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 1.0e-37 159.8 94 80.9
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 1.0e-37 159.8 91 84.6
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 1.3e-37 159.5 85 90.6
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 1.3e-37 159.5 93 82.8
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 1.3e-37 159.5 92 85.9
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 1.7e-37 159.1 94 83.0
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 1.7e-37 159.1 91 83.5
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 1.7e-37 159.1 94 80.9
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 2.2e-37 158.7 90 84.4
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.9e-37 158.3 85 88.2
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 2.9e-37 158.3 94 80.9
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 6.5e-37 157.1 85 87.1
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 8.5e-37 156.8 91 84.6
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 1.4e-36 156.0 84 86.9
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 1.4e-36 156.0 94 79.8
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 1.4e-36 156.0 94 79.8
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 1.9e-36 155.6 85 87.1
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 1.9e-36 155.6 84 86.9
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 3.2e-36 154.8 94 78.7
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 4.2e-36 154.5 93 81.7
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 5.5e-36 154.1 91 81.3
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 5.5e-36 154.1 92 83.7
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 5.5e-36 154.1 85 87.1
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 5.5e-36 154.1 85 88.2
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 5.5e-36 154.1 93 80.6
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 5.5e-36 154.1 93 80.6
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 7.2e-36 153.7 87 87.4
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 7.2e-36 153.7 94 78.7
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 7.2e-36 153.7 94 78.7
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 9.4e-36 153.3 94 78.7
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 9.4e-36 153.3 93 79.6
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 9.4e-36 153.3 89 83.1
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 1.2e-35 152.9 94 79.8
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.2e-35 152.9 93 80.6
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.2e-35 152.9 93 80.6
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.2e-35 152.9 93 80.6
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 1.2e-35 152.9 94 78.7
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 2.1e-35 152.1 89 82.0
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 2.7e-35 151.8 90 82.2
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 3.6e-35 151.4 85 87.1
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 3.6e-35 151.4 85 84.7
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 3.6e-35 151.4 94 79.8
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 6.1e-35 150.6 84 85.7
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.1e-35 150.6 93 79.6
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.1e-35 150.6 93 79.6
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 7.9e-35 150.2 83 85.5
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.0e-34 149.8 88 80.7
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 1.4e-34 149.4 90 80.0
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 1.8e-34 149.1 94 77.7
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 1.8e-34 149.1 91 81.3
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 1.8e-34 149.1 91 81.3
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.3e-34 148.7 96 77.1
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.3e-34 148.7 96 77.1
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 3.0e-34 148.3 93 78.5
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 3.9e-34 147.9 94 75.5
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 3.9e-34 147.9 86 83.7
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 3.9e-34 147.9 87 80.5
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 3.9e-34 147.9 87 80.5
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 5.2e-34 147.5 94 76.6
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 6.7e-34 147.1 85 84.7
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 6.7e-34 147.1 93 75.3
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 8.8e-34 146.7 90 78.9
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 8.8e-34 146.7 90 78.9
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 8.8e-34 146.7 80 85.0
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 8.8e-34 146.7 90 80.0
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 2.0e-33 145.6 93 73.1
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 2.6e-33 145.2 92 75.0
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 3.3e-33 144.8 83 81.9
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 7.4e-33 143.7 93 76.3
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 9.7e-33 143.3 93 74.2
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 2.2e-32 142.1 93 73.1
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 2.2e-32 142.1 88 78.4
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 2.2e-32 142.1 88 78.4
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 6.3e-32 140.6 73 89.0
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 1.1e-31 139.8 84 75.0
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 1.8e-31 139.0 75 85.3
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 1.8e-31 139.0 81 81.5
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.3e-31 137.5 88 71.6
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 5.3e-31 137.5 88 71.6
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 7.0e-31 137.1 88 71.6
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 7.0e-31 137.1 88 71.6
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 9.1e-31 136.7 84 78.6
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 9.1e-31 136.7 82 78.0
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.6e-30 136.0 88 70.5
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 2.0e-30 135.6 75 84.0
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 4.5e-30 134.4 88 75.0
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 2.2e-29 132.1 75 82.7
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 6.5e-29 130.6 91 70.3
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 8.5e-29 130.2 69 84.1
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.1e-28 129.8 87 70.1
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 3.2e-28 128.3 69 84.1
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.6e-27 125.9 76 75.0
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 2.7e-27 125.2 73 79.5
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 1.0e-26 123.2 69 79.7
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 7.0e-23 110.5 78 64.1
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 9.1e-23 110.2 68 79.4
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 9.1e-23 110.2 68 79.4
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 9.1e-23 110.2 75 65.3
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 1.6e-22 109.4 89 68.5
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 1.6e-22 109.4 70 68.6
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 1.0e-21 106.7 69 73.9
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 4.7e-19 97.8 64 65.6
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 8.0e-19 97.1 56 78.6
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 5.2e-18 94.4 70 58.6
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 4.8e-16 87.8 55 65.5
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 1.1e-15 86.7 65 56.9
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 3.2e-12 75.1 89 49.4
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 9.5e-12 73.6 85 51.8
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 1.5e-09 66.2 67 50.7
Cre06.g278188 Chlamydomonas reinhardtii HOM05D005547 ORTHO05D006887 9.2e-07 57.0 63 47.6


User provided reference genes

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