Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 2.9e-69 265.0 125 100.0
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.8e-35 152.1 134 58.2
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.8e-35 152.1 134 58.2
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 3.6e-35 151.8 134 57.5
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 3.6e-35 151.8 134 58.2
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 3.6e-35 151.8 134 58.2
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 6.1e-35 151.0 134 57.5
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 6.1e-35 151.0 134 57.5
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.0e-34 150.2 134 57.5
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 2.3e-34 149.1 134 56.7
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 2.3e-34 149.1 134 56.7
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.3e-34 149.1 134 56.7
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 2.3e-34 149.1 134 56.7
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 3.0e-34 148.7 134 56.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 5.2e-34 147.9 134 56.0
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 5.2e-34 147.9 134 56.0
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 5.2e-34 147.9 134 56.0
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 8.9e-34 147.1 134 56.0
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 4.4e-33 144.8 134 55.2
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.8e-32 142.1 134 53.7
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 2.4e-31 139.0 134 52.2
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 7.0e-31 137.5 134 51.5
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.0e-31 137.5 134 51.5
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 9.2e-31 137.1 134 50.7
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.6e-30 136.3 134 50.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.6e-30 136.3 134 53.7
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.0e-30 136.0 134 50.7
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 2.0e-30 136.0 134 50.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.7e-30 135.6 134 50.7
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 3.5e-30 135.2 134 50.0
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 3.5e-30 135.2 134 50.7
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 3.5e-30 135.2 134 53.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 4.5e-30 134.8 134 53.0
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 4.5e-30 134.8 134 50.0
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 5.9e-30 134.4 134 50.0
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.9e-30 134.4 134 53.0
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 5.9e-30 134.4 134 50.0
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 5.9e-30 134.4 134 51.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 5.9e-30 134.4 134 50.0
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.9e-30 134.4 134 50.7
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 7.8e-30 134.0 133 49.6
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 7.8e-30 134.0 134 49.3
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 7.8e-30 134.0 134 51.5
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 7.8e-30 134.0 134 49.3
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.8e-30 134.0 134 50.0
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 1.0e-29 133.7 133 50.4
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.0e-29 133.7 134 50.7
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.0e-29 133.7 133 50.4
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.3e-29 133.3 134 50.0
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.3e-29 133.3 134 50.0
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.3e-29 133.3 133 50.4
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.3e-29 133.3 133 49.6
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.3e-29 133.3 133 50.4
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 1.3e-29 133.3 133 50.4
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.3e-29 133.3 133 50.4
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.7e-29 132.9 134 49.3
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.7e-29 132.9 134 49.3
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 1.7e-29 132.9 133 49.6
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 2.3e-29 132.5 134 52.2
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.3e-29 132.5 134 50.7
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 2.3e-29 132.5 134 50.0
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 2.9e-29 132.1 133 50.4
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.9e-29 132.1 134 49.3
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.9e-29 132.1 133 49.6
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 2.9e-29 132.1 134 49.3
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.9e-29 132.1 135 48.9
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.9e-29 132.1 137 47.4
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.9e-29 132.1 134 50.0
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 3.8e-29 131.7 134 48.5
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 3.8e-29 131.7 134 50.0
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.8e-29 131.7 134 49.3
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.0e-29 131.3 134 52.2
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 6.6e-29 131.0 134 49.3
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 6.6e-29 131.0 134 49.3
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.6e-29 131.0 134 47.8
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 6.6e-29 131.0 134 47.8
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 6.6e-29 131.0 134 49.3
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 6.6e-29 131.0 134 47.0
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 8.6e-29 130.6 134 50.0
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 8.6e-29 130.6 134 48.5
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 8.6e-29 130.6 135 48.9
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 8.6e-29 130.6 134 51.5
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.1e-28 130.2 134 47.8
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.9e-28 129.4 134 48.5
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.9e-28 129.4 134 48.5
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.9e-28 129.4 134 48.5
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.5e-28 129.0 134 47.8
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 2.5e-28 129.0 134 47.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 2.5e-28 129.0 133 49.6
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.5e-28 129.0 134 48.5
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.5e-28 129.0 128 49.2
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 4.3e-28 128.3 134 47.8
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 7.3e-28 127.5 133 47.4
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 7.3e-28 127.5 137 46.0
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 7.3e-28 127.5 134 48.5
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 9.5e-28 127.1 134 47.0
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 9.5e-28 127.1 134 47.8
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 9.5e-28 127.1 134 47.0
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 9.5e-28 127.1 133 49.6
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.2e-27 126.7 134 49.3
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.2e-27 126.7 133 47.4
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.2e-27 126.7 136 48.5
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.6e-27 126.3 134 45.5
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.6e-27 126.3 134 45.5
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.6e-27 126.3 134 47.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.1e-27 125.9 130 48.5
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.8e-27 125.6 134 47.8
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 2.8e-27 125.6 133 47.4
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.8e-27 125.6 133 46.6
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.8e-27 125.6 133 46.6
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.8e-27 125.6 133 45.9
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 4.7e-27 124.8 134 47.8
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 4.7e-27 124.8 134 47.8
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.7e-27 124.8 134 45.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 1.0e-26 123.6 135 48.9
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.8e-26 122.9 134 44.8
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.3e-26 122.5 134 45.5
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 3.0e-26 122.1 134 47.8
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 4.0e-26 121.7 134 45.5
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 4.0e-26 121.7 134 44.8
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 5.2e-26 121.3 71 77.5
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 8.9e-26 120.6 134 44.0
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.5e-25 119.8 134 45.5
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.6e-25 119.0 71 77.5
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 4.4e-25 118.2 71 76.1
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.9e-24 115.5 130 45.4
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.9e-24 114.8 72 69.4
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.9e-23 112.8 125 44.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.0e-23 110.9 68 70.6
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 3.5e-22 108.6 128 44.5
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.5e-22 108.6 133 44.4
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 6.0e-22 107.8 134 44.0
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 6.6e-21 104.4 57 80.7
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.5e-20 100.5 63 73.0
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.6e-19 99.8 70 64.3
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 6.8e-18 94.4 127 39.4
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 2.9e-16 89.0 132 37.1
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 2.1e-14 82.8 45 75.6
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.0e-13 80.5 65 52.3
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-13 80.1 102 42.2
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-13 80.1 102 42.2
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.0e-13 79.0 52 71.2
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.8e-11 72.4 37 86.5
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 6.8e-10 67.8 77 48.1
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 4.6e-06 55.1 34 67.6


User provided reference genes

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