Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.8e-24 114.4 56 100.0
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 2.8e-24 114.4 56 100.0
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 2.8e-24 114.4 56 100.0
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.8e-24 114.4 56 100.0
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.4e-23 112.1 56 96.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 3.1e-23 110.9 56 96.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 3.5e-22 107.5 56 94.6
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 5.9e-22 106.7 56 92.9
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 7.8e-22 106.3 56 96.4
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 2.3e-21 104.8 54 92.6
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 2.3e-21 104.8 54 92.6
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 5.0e-21 103.6 50 100.0
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 5.0e-21 103.6 50 100.0
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 5.0e-21 103.6 50 100.0
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 5.0e-21 103.6 58 91.4
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 6.6e-21 103.2 56 89.3
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 3.3e-20 100.9 56 85.7
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 4.7e-19 97.1 55 81.8
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 4.7e-19 97.1 55 81.8
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.1e-18 94.4 55 80.0
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 5.2e-18 93.6 55 78.2
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 6.8e-18 93.2 56 85.7
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 6.8e-18 93.2 55 78.2
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.2e-17 92.4 55 78.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-17 92.0 56 83.9
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.5e-17 92.0 55 78.2
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.0e-17 91.7 55 76.4
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 2.0e-17 91.7 55 78.2
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 3.4e-17 90.9 55 76.4
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 3.4e-17 90.9 55 74.5
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 4.4e-17 90.5 55 76.4
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 5.8e-17 90.1 55 76.4
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.3e-16 89.0 55 76.4
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.3e-16 89.0 55 74.5
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.2e-16 88.2 55 76.4
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 2.2e-16 88.2 55 74.5
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.9e-16 87.8 50 82.0
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.9e-16 87.8 50 82.0
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 3.7e-16 87.4 55 76.4
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.7e-16 87.4 55 74.5
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 4.9e-16 87.0 55 74.5
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.9e-16 87.0 56 76.8
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 4.9e-16 87.0 55 74.5
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.4e-16 86.7 55 76.4
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.3e-16 86.3 56 73.2
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 8.3e-16 86.3 55 74.5
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.1e-15 85.9 55 72.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.1e-15 85.9 55 72.7
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 1.1e-15 85.9 55 74.5
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.4e-15 85.5 55 69.1
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.4e-15 85.5 55 70.9
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.9e-15 85.1 55 76.4
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.9e-15 85.1 55 72.7
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.4e-15 84.7 56 73.2
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.4e-15 84.7 50 80.0
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.4e-15 84.7 55 72.7
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 2.4e-15 84.7 56 73.2
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.2e-15 84.3 55 72.7
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.2e-15 84.3 55 72.7
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.2e-15 84.3 56 76.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 4.1e-15 84.0 55 70.9
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 5.4e-15 83.6 55 70.9
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 5.4e-15 83.6 55 72.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 9.2e-15 82.8 55 69.1
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 9.2e-15 82.8 56 73.2
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.2e-14 82.4 57 78.9
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 1.2e-14 82.4 55 70.9
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.2e-14 82.4 57 78.9
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.6e-14 82.0 55 70.9
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.6e-14 82.0 55 70.9
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.6e-14 82.0 57 78.9
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.6e-14 82.0 57 78.9
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.0e-14 81.6 55 69.1
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.7e-14 81.3 55 74.5
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.7e-14 81.3 55 70.9
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.7e-14 81.3 55 70.9
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.6e-14 80.5 56 73.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.6e-14 80.5 56 67.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.0e-13 79.3 56 69.6
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.7e-13 78.6 55 65.5
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.7e-13 78.6 49 71.4
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.7e-13 78.6 50 76.0
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.0e-13 77.8 55 70.9
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.0e-13 77.8 52 71.2
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 3.9e-13 77.4 56 66.1
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 5.0e-13 77.0 55 67.3
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 6.6e-13 76.6 55 70.9
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 8.6e-13 76.3 56 67.9
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.1e-12 75.9 55 67.3
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.1e-12 75.9 51 72.5
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.1e-12 75.9 52 71.2
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.5e-12 75.5 56 66.1
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.3e-12 74.3 78 52.6
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 4.3e-12 73.9 56 64.3
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 5.6e-12 73.6 52 69.2
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 7.3e-12 73.2 55 65.5
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 9.5e-12 72.8 62 59.7
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.2e-11 72.4 55 67.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.6e-11 72.0 42 78.6
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 2.8e-11 71.2 50 74.0
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.8e-11 71.2 74 52.7
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.6e-11 70.9 55 65.5
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 8.0e-11 69.7 55 58.2
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.3e-10 68.2 55 56.4
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.2e-09 65.9 55 63.6
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.5e-09 65.5 55 60.0
BolC7t43933H Brassica oleracea HOM05D000003 ORTHO05D001498 7.5e-09 63.2 59 59.3
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 9.8e-09 62.8 59 59.3
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.3e-08 62.4 45 66.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-08 62.0 59 57.6
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 6.4e-08 60.1 93 41.9
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.1e-07 59.3 50 64.0


User provided reference genes

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