Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-156 555.8 288 100.0
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 3.0e-154 548.5 288 98.6
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 4.1e-151 538.1 282 98.6
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.6e-150 536.2 282 98.2
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 5.0e-149 531.2 282 97.5
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 3.3e-148 528.5 288 95.1
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 9.5e-148 526.9 288 94.1
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 9.5e-148 526.9 288 95.1
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 7.5e-145 517.3 289 93.1
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 7.8e-142 507.3 291 90.7
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 8.6e-125 450.7 266 89.5
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 4.7e-123 444.9 255 90.6
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 2.0e-121 439.5 287 82.6
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.4e-119 433.3 291 77.7
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 4.6e-118 428.3 261 83.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 3.3e-116 422.2 359 68.0
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.0e-113 412.9 286 75.5
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.6e-113 412.5 274 76.6
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 5.8e-113 411.4 290 74.5
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 2.2e-112 409.5 271 77.1
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.2e-112 409.5 271 74.9
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 2.9e-112 409.1 272 77.6
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 3.8e-112 408.7 292 73.6
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-111 406.4 293 73.7
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 9.3e-111 404.1 273 75.8
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 9.3e-111 404.1 273 76.2
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.2e-110 403.7 290 73.1
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.0e-109 399.1 287 70.7
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 3.9e-109 398.7 271 75.3
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 6.6e-109 397.9 293 71.7
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 8.7e-109 397.5 260 77.7
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.1e-108 397.1 277 73.6
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.9e-108 396.4 294 71.4
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.5e-108 396.0 277 74.4
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 7.3e-108 394.4 284 72.5
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 7.3e-108 394.4 289 72.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 9.6e-108 394.0 306 69.9
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 9.6e-108 394.0 275 74.9
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.1e-107 392.9 277 75.5
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 2.8e-107 392.5 294 71.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 4.8e-107 391.7 282 73.8
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 4.8e-107 391.7 244 79.9
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.1e-106 390.6 283 70.7
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.4e-106 390.2 282 73.0
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.5e-105 386.7 289 71.3
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.5e-105 386.7 283 71.4
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.0e-105 386.3 280 73.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 5.8e-105 384.8 291 71.8
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 5.8e-105 384.8 245 78.8
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 7.6e-105 384.4 278 71.9
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.2e-104 382.9 267 73.8
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 2.2e-104 382.9 296 70.6
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.2e-104 382.9 283 70.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.9e-104 382.5 271 73.1
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 4.9e-104 381.7 275 72.0
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.4e-104 381.3 253 74.7
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.9e-103 379.8 283 70.0
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.9e-103 379.8 284 69.4
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 2.4e-103 379.4 299 66.2
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 3.2e-103 379.0 275 71.3
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 9.3e-103 377.5 296 66.6
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 9.3e-103 377.5 283 69.6
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.2e-102 377.1 283 70.7
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 2.1e-102 376.3 291 69.4
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 2.7e-102 375.9 290 70.3
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 4.6e-102 375.2 281 70.8
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 7.9e-102 374.4 291 70.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.9e-101 372.1 248 78.2
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 5.1e-101 371.7 259 71.4
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.1e-100 370.5 198 93.9
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.1e-100 370.5 312 63.8
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.5e-100 369.4 294 67.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 7.4e-100 367.9 270 71.9
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.6e-99 366.7 238 77.7
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 8.1e-99 364.4 283 67.5
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 8.1e-99 364.4 291 67.0
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.4e-98 363.6 294 67.7
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 4.0e-98 362.1 306 65.4
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 5.8e-97 358.2 294 65.6
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 3.8e-96 355.5 208 91.3
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.8e-96 355.5 223 80.3
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 7.1e-95 351.3 296 62.2
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.6e-94 350.1 271 67.2
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.8e-93 346.7 224 77.7
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 8.7e-93 344.4 278 66.2
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 8.7e-93 344.4 271 67.9
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 6.9e-90 334.7 275 64.4
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.5e-89 333.6 261 69.3
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.7e-88 330.1 237 70.5
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.8e-88 328.9 236 71.2
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 6.5e-88 328.2 293 61.8
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 8.4e-88 327.8 300 60.3
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 2.1e-86 323.2 244 67.6
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 4.3e-84 315.5 338 58.0
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 9.6e-84 314.3 287 61.7
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 9.6e-84 314.3 224 73.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 2.1e-83 313.2 278 62.2
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.4e-82 310.5 262 64.5
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.4e-82 309.7 196 78.6
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.1e-82 308.9 213 71.4
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 9.3e-79 297.7 198 77.3
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 4.6e-78 295.4 338 51.8
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.6e-70 270.4 267 61.8
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 2.7e-70 269.6 234 62.0
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 3.6e-70 269.2 196 68.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 2.3e-69 266.5 172 76.7
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.3e-67 258.5 176 74.4
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 3.4e-65 252.7 253 54.9
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 4.1e-58 229.2 225 57.3
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 4.5e-57 225.7 233 51.1
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.1e-55 221.1 229 49.8
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 9.4e-55 218.0 226 48.2
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.8e-51 206.5 197 57.9
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 3.7e-51 206.1 123 90.2
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.2e-48 196.8 123 87.0
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.2e-47 191.8 167 58.1
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-45 186.0 123 82.9
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.5e-44 184.1 135 73.3
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 4.5e-41 172.6 96 93.8
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 3.2e-39 166.4 285 43.5
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.6e-38 164.1 139 65.5
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.3e-31 139.8 92 73.9
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 8.0e-30 135.2 200 49.5
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.0e-29 134.8 200 50.0
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.5e-28 131.0 73 93.2
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 1.4e-26 124.4 88 78.4
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 3.5e-25 119.8 79 79.7
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.1e-23 114.8 56 100.0
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.1e-23 114.8 56 100.0
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-22 110.2 113 49.6
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-21 107.8 170 38.8
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.3e-21 107.1 78 65.4
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 2.9e-19 100.1 102 57.8
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 4.9e-19 99.4 59 79.7
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 2.7e-17 93.6 56 85.7
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 6.6e-16 89.0 93 57.0
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 5.6e-15 85.9 241 30.3
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 4.7e-14 82.8 55 70.9
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.2e-12 78.2 49 71.4
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.4e-12 76.3 50 74.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 4.9e-11 72.8 110 41.8
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.9e-10 70.9 59 54.2
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 5.4e-10 69.3 89 48.3
BolC7t43933H Brassica oleracea HOM05D000003 ORTHO05D001498 3.0e-08 63.5 59 59.3
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 8.6e-08 62.0 178 25.8
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.3e-07 58.9 49 61.2
A02p31010 Brassica napus HOM05D005250 ORTHO05D096592 9.5e-07 58.5 74 50.0


User provided reference genes

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