Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30623 Brassica carinata HOM05D007119 ORTHO05D009220 5.2e-265 917.1 458 100.0
BcaC04g21404 Brassica carinata HOM05D007119 ORTHO05D009220 6.8e-241 837.0 458 91.0
BolC9t56067H Brassica oleracea HOM05D007119 ORTHO05D009220 6.8e-241 837.0 458 91.0
A09p25150 Brassica napus HOM05D007119 ORTHO05D009220 1.5e-240 835.9 458 91.0
BraA09t38102Z Brassica rapa HOM05D007119 ORTHO05D009220 4.4e-240 834.3 458 90.6
C09p32210 Brassica napus HOM05D007119 ORTHO05D009220 1.7e-239 832.4 458 91.0
BcaC06g31092 Brassica carinata HOM05D007119 ORTHO05D009220 8.9e-233 810.1 463 86.6
Sp2g15290 Schrenkiella parvula HOM05D007119 ORTHO05D009220 5.8e-232 807.4 459 87.1
AT3G26090 Arabidopsis thaliana HOM05D007119 ORTHO05D009220 1.6e-229 799.3 462 85.9
BcaC06g33928 Brassica carinata HOM05D007119 ORTHO05D009220 6.0e-229 797.3 459 85.8
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 3.9e-228 794.7 459 85.8
CARHR147090 Cardamine hirsuta HOM05D007119 ORTHO05D009220 6.6e-228 793.9 462 84.6
C07p35060 Brassica napus HOM05D007119 ORTHO05D009220 8.6e-228 793.5 459 85.6
A06p42260 Brassica napus HOM05D007119 ORTHO05D009220 2.5e-227 792.0 460 85.2
BraA06t27142Z Brassica rapa HOM05D007119 ORTHO05D009220 2.5e-227 792.0 460 85.2
Carub.0005s0397 Capsella rubella HOM05D007119 ORTHO05D009220 1.2e-226 789.6 462 84.8
AL5G14790 Arabidopsis lyrata HOM05D007119 ORTHO05D009220 8.1e-226 786.9 462 84.4
Aa31LG2G6270 Aethionema arabicum HOM05D007119 ORTHO05D009220 1.0e-220 770.0 466 81.3
THA.LOC104825682 Tarenaya hassleriana HOM05D007119 ORTHO05D009220 5.6e-203 711.1 460 74.6
Thhalv10004169m.g Eutrema salsugineum HOM05D007119 ORTHO05D009220 6.9e-201 704.1 395 87.1
BcaC06g31096 Brassica carinata HOM05D007119 ORTHO05D009220 6.0e-189 664.5 445 77.8
CiPaw.05G175700 Carya illinoinensis HOM05D007119 ORTHO05D009220 1.9e-174 616.3 456 64.9
Ciclev10031444m.g Citrus clementina HOM05D007119 ORTHO05D009220 7.9e-173 610.9 454 64.5
Potri.008G181500 Populus trichocarpa HOM05D007119 ORTHO05D009220 6.7e-172 607.8 450 64.7
Manes.13G018700 Manihot esculenta HOM05D007119 ORTHO05D009220 2.0e-171 606.3 456 63.4
Thecc.02G269100 Theobroma cacao HOM05D007119 ORTHO05D009220 8.2e-170 600.9 456 64.0
TAR629G0375 Trochodendron aralioides HOM05D007119 ORTHO05D009220 1.8e-169 599.7 458 63.5
GSVIVG01010292001 Vitis vinifera HOM05D007119 ORTHO05D009220 2.4e-169 599.4 455 62.2
Dinv14769 Davidia involucrata HOM05D007119 ORTHO05D009220 5.3e-169 598.2 454 63.0
QL03p055873 Quercus lobata HOM05D007119 ORTHO05D009220 5.3e-169 598.2 454 62.3
COL.COLO4_23551 Corchorus olitorius HOM05D007119 ORTHO05D009220 5.9e-168 594.7 456 62.1
CSS0010905 Camellia sinensis var. sinensis HOM05D007119 ORTHO05D009220 2.9e-167 592.4 456 62.5
Phvul.001G257500 Phaseolus vulgaris HOM05D007119 ORTHO05D009220 3.8e-167 592.0 453 63.6
Actinidia15126 Actinidia chinensis HOM05D007119 ORTHO05D009220 1.4e-166 590.1 453 62.5
Glyma.18G011400 Glycine max HOM05D007119 ORTHO05D009220 3.2e-166 589.0 453 62.5
FvH4_4g24980 Fragaria vesca HOM05D007119 ORTHO05D009220 4.2e-166 588.6 450 62.7
Glyma.11G245800 Glycine max HOM05D007119 ORTHO05D009220 2.1e-165 586.3 453 61.8
Eucgr.H04699 Eucalyptus grandis HOM05D007119 ORTHO05D009220 2.7e-165 585.9 456 60.5
Gorai.008G162700 Gossypium raimondii HOM05D007119 ORTHO05D009220 1.0e-164 583.9 457 61.7
Prupe.1G238900 Prunus persica HOM05D007119 ORTHO05D009220 1.0e-164 583.9 448 62.7
Gohir.D12G151200 Gossypium hirsutum HOM05D007119 ORTHO05D009220 1.8e-164 583.2 457 61.7
TWI36G1063 Tripterygium wilfordii HOM05D007119 ORTHO05D009220 5.2e-164 581.6 459 61.2
Medtr3g086170 Medicago truncatula HOM05D007119 ORTHO05D009220 8.8e-164 580.9 453 61.1
arahy.Tifrunner.gnm1.ann1.3UY64B Arachis hypogaea HOM05D007119 ORTHO05D009220 1.5e-163 580.1 456 60.5
arahy.Tifrunner.gnm1.ann1.U7Q0BA Arachis hypogaea HOM05D007119 ORTHO05D009220 1.5e-163 580.1 456 60.5
Duzib248G1022 Durio zibethinus HOM05D007119 ORTHO05D009220 1.5e-163 580.1 455 62.4
RcHm_v2.0_Chr4g0432041 Rosa chinensis HOM05D007119 ORTHO05D009220 1.5e-163 580.1 450 61.8
Lalb_Chr23g0277791 Lupinus albus HOM05D007119 ORTHO05D009220 1.7e-162 576.6 453 62.5
Hma1.2p1_0079F.1_g041390 Hydrangea macrophylla HOM05D007119 ORTHO05D009220 2.2e-162 576.2 460 61.5
TPR.G14230 Trifolium pratense HOM05D007119 ORTHO05D009220 4.8e-162 575.1 468 59.2
Atru.chr11.2204 Acer truncatum HOM05D007119 ORTHO05D009220 1.4e-161 573.5 454 61.0
CANSAT01G1522 Cannabis sativa HOM05D007119 ORTHO05D009220 1.4e-161 573.5 459 60.3
MD16G1107500 Malus domestica HOM05D007119 ORTHO05D009220 3.1e-161 572.4 453 62.9
Haze_12309 Corylus avellana HOM05D007119 ORTHO05D009220 9.1e-161 570.9 523 54.5
MD13G1107500 Malus domestica HOM05D007119 ORTHO05D009220 4.5e-160 568.5 452 60.8
Sed0010682 Sechium edule HOM05D007119 ORTHO05D009220 7.7e-160 567.8 453 61.6
Lj6g0003042 Lotus japonicus HOM05D007119 ORTHO05D009220 1.0e-159 567.4 452 61.3
TAR371G0886 Trochodendron aralioides HOM05D007119 ORTHO05D009220 2.9e-159 565.8 446 61.7
CAN.G49.9 Capsicum annuum HOM05D007119 ORTHO05D009220 1.9e-158 563.1 456 59.4
CsaV3_5G030670 Cucumis sativus L. HOM05D007119 ORTHO05D009220 3.2e-158 562.4 453 61.4
Nn3g16605 Nelumbo nucifera HOM05D007119 ORTHO05D009220 1.2e-157 560.5 459 59.3
Gorai.005G173800 Gossypium raimondii HOM05D007119 ORTHO05D009220 8.0e-157 557.8 460 60.4
Sabra08G0138500 Salix brachista HOM05D007119 ORTHO05D009220 1.0e-156 557.4 548 52.7
DCAR_007027 Daucus carota HOM05D007119 ORTHO05D009220 3.7e-154 548.9 448 58.9
VMungo1383G3713 Vigna mungo HOM05D007119 ORTHO05D009220 4.8e-154 548.5 453 58.3
vmacro16153 Vaccinium macrocarpon HOM05D007119 ORTHO05D009220 7.0e-153 544.7 512 54.9
Sc14g0008910 Simmondsia chinensis HOM05D007119 ORTHO05D009220 9.1e-153 544.3 458 58.3
Cc11_g16270 Coffea canephora HOM05D007119 ORTHO05D009220 1.6e-152 543.5 459 57.1
Gohir.A03G131100 Gossypium hirsutum HOM05D007119 ORTHO05D009220 2.7e-152 542.7 460 59.1
Gohir.A12G146600 Gossypium hirsutum HOM05D007119 ORTHO05D009220 4.5e-152 542.0 466 58.2
Migut.E00228 Erythranthe guttata HOM05D007119 ORTHO05D009220 5.0e-151 538.5 459 57.5
MSTRG.13331 Avicennia marina HOM05D007119 ORTHO05D009220 2.1e-149 533.1 454 57.7
Lsat_1_v5_gn_8_150440 Lactuca sativa HOM05D007119 ORTHO05D009220 2.1e-149 533.1 460 57.0
FAN22G2246 Fragaria x ananassa HOM05D007119 ORTHO05D009220 1.0e-148 530.8 454 58.6
Aqoxy3G01324 Aquilegia oxysepala HOM05D007119 ORTHO05D009220 5.7e-147 525.0 451 55.2
HanXRQChr12g0372081 Helianthus annuus HOM05D007119 ORTHO05D009220 2.8e-146 522.7 449 56.8
Solyc05g014160.4 Solanum lycopersicum HOM05D007119 ORTHO05D009220 2.8e-146 522.7 432 59.3
Hund25421 Selenicereus undatus HOM05D007119 ORTHO05D009220 9.1e-145 517.7 472 54.2
PSO017G0770 Papaver somniferum HOM05D007119 ORTHO05D009220 2.0e-144 516.5 460 55.4
ATR0824G105 Amborella trichopoda HOM05D007119 ORTHO05D009220 5.9e-144 515.0 460 53.9
Ah.03g133650 Amaranthus hybridus HOM05D007119 ORTHO05D009220 2.1e-141 506.5 456 53.5
Gohir.D02G154800 Gossypium hirsutum HOM05D007119 ORTHO05D009220 2.1e-141 506.5 391 63.4
Psat5g093400 Pisum sativum HOM05D007119 ORTHO05D009220 3.0e-140 502.7 391 61.4
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 1.7e-138 496.9 417 57.6
AUR62024193 Chenopodium quinoa HOM05D007119 ORTHO05D009220 6.3e-138 495.0 475 50.9
SalBow8G1200 Salvia bowleyana HOM05D007119 ORTHO05D009220 4.1e-137 492.3 433 55.2
Nn4g22487 Nelumbo nucifera HOM05D007119 ORTHO05D009220 7.8e-136 488.0 392 58.9
ClCG05G026170 Citrullus lanatus HOM05D007119 ORTHO05D009220 6.1e-133 478.4 464 54.7
Lj6C818G13 Lonicera japonica HOM05D007119 ORTHO05D009220 2.3e-132 476.5 426 58.0
Peaxi162Scf00128g00648 Petunia axillaris HOM05D007119 ORTHO05D009220 9.8e-131 471.1 403 57.8
EL10As2g23223 Beta vulgaris HOM05D007119 ORTHO05D009220 2.4e-129 466.5 468 51.3
SGA_v2.0_scaffold87G27113 Striga asiatica HOM05D007119 ORTHO05D009220 5.6e-126 455.3 392 56.4
MELO3C011902.2 Cucumis melo HOM05D007119 ORTHO05D009220 9.2e-113 411.4 464 50.4
Nitab4.5_0002688g0040 Nicotiana tabacum HOM05D007119 ORTHO05D009220 1.1e-110 404.4 333 59.5
Oeu012665.1 Olea europaea HOM05D007119 ORTHO05D009220 1.2e-107 394.4 323 57.9
SEGI_05094 Sequoiadendron giganteum HOM05D007119 ORTHO05D009220 6.4e-106 388.7 399 47.1
Ca_16499_v3 Cicer arietinum L. HOM05D007119 ORTHO05D009220 7.3e-102 375.2 303 61.1
Sopen05g009180 Solanum pennellii HOM05D007119 ORTHO05D009220 2.8e-101 373.2 310 59.7
AUR62005541 Chenopodium quinoa HOM05D007119 ORTHO05D009220 7.6e-83 312.0 320 49.4
MBI08_g43995_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 2.9e-82 310.1 256 60.9
MBI08_g44099_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 2.9e-82 310.1 256 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1226 Anthoceros agrestis HOM05D001585 ORTHO05D001677 1.0e-71 275.0 455 36.7
SMO165G0024 Selaginella moellendorffii HOM05D007119 ORTHO05D009220 1.4e-63 248.1 352 38.4
Nitab4.5_0000041g0220 Nicotiana tabacum HOM05D007119 ORTHO05D009220 1.2e-59 235.0 208 56.2
PGSC0003DMG401010743 Solanum tuberosum HOM05D007119 ORTHO05D009220 1.0e-58 231.9 183 62.3
HanXRQChr08g0208021 Helianthus annuus HOM05D007119 ORTHO05D009220 1.3e-58 231.5 207 54.1
CANSAT25G1465 Cannabis sativa HOM05D007119 ORTHO05D009220 2.4e-28 131.0 114 59.6
HanXRQChr08g0208031 Helianthus annuus HOM05D007119 ORTHO05D009220 1.1e-20 105.5 100 55.0
Nitab4.5_0002688g0050 Nicotiana tabacum HOM05D007119 ORTHO05D036862 7.5e-14 82.8 68 57.4
Nitab4.5_0000041g0230 Nicotiana tabacum HOM05D007119 ORTHO05D036862 3.7e-13 80.5 68 57.4
Peaxi162Scf00128g00647 Petunia axillaris HOM05D007119 ORTHO05D036862 6.6e-10 69.7 80 46.2


User provided reference genes

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