Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 6.1e-170 600.9 341 100.0
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 2.8e-154 548.9 344 90.7
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 2.8e-154 548.9 344 90.7
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 7.5e-152 540.8 344 91.0
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 8.3e-151 537.3 344 91.0
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 8.3e-151 537.3 344 91.0
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 5.4e-134 481.5 346 83.5
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 9.9e-128 460.7 349 80.8
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.3e-127 460.3 348 79.9
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 2.2e-127 459.5 343 80.2
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 9.9e-120 434.1 346 78.3
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 8.4e-119 431.0 351 75.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 4.1e-73 279.3 350 55.4
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.7e-59 232.3 373 53.9
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 4.2e-46 189.5 327 45.3
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.7e-45 186.0 304 48.0
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.0e-44 184.9 342 44.4
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 3.0e-44 183.3 340 42.4
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 4.0e-44 183.0 328 42.7
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 8.8e-44 181.8 314 45.5
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 8.8e-44 181.8 314 45.5
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.2e-43 181.4 306 46.7
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 3.4e-43 179.9 357 44.0
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.3e-42 177.9 317 46.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.7e-42 177.6 297 46.1
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 6.3e-42 175.6 329 46.5
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 6.3e-42 175.6 273 45.1
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 8.3e-42 175.3 302 43.0
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.4e-41 174.5 303 44.9
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 2.4e-41 173.7 324 44.1
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.4e-41 173.7 330 45.2
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.4e-41 173.7 308 43.8
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.4e-41 173.7 307 45.0
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.1e-41 173.3 304 43.8
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 7.0e-41 172.2 335 41.8
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.2e-41 171.8 328 44.5
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 1.2e-40 171.4 323 45.8
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.6e-40 171.0 335 41.2
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.6e-40 171.0 330 42.7
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.7e-40 170.2 355 38.6
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.7e-40 170.2 330 44.5
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 3.5e-40 169.9 332 43.4
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.5e-40 169.9 319 43.3
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.5e-40 169.5 319 43.3
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.9e-40 169.1 323 43.7
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 5.9e-40 169.1 323 40.6
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 7.8e-40 168.7 332 42.2
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 7.8e-40 168.7 332 42.8
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.0e-39 168.3 325 42.5
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.3e-39 167.9 349 41.3
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.9e-39 166.8 345 41.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.8e-39 166.4 309 44.3
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 6.6e-39 165.6 314 41.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 6.6e-39 165.6 331 40.8
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 8.6e-39 165.2 273 45.4
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.1e-38 164.9 368 39.1
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.5e-38 164.5 349 41.5
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.5e-38 163.7 337 40.9
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.5e-38 163.7 326 40.8
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 9.5e-38 161.8 357 42.3
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 9.5e-38 161.8 340 40.0
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.2e-37 161.4 355 37.2
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.1e-37 160.6 335 39.7
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.8e-37 160.2 333 41.4
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.8e-37 160.2 316 41.1
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 3.6e-37 159.8 306 41.8
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 4.7e-37 159.5 331 42.3
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.0e-36 158.3 327 40.1
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.0e-36 158.3 303 41.6
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.0e-36 156.8 325 40.0
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 3.0e-36 156.8 332 42.2
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 3.0e-36 156.8 331 39.9
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.2e-36 156.0 324 44.8
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 5.2e-36 156.0 349 39.3
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 5.2e-36 156.0 320 41.9
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 6.8e-36 155.6 343 37.3
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 8.9e-36 155.2 328 41.5
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.5e-35 154.5 355 40.3
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 2.0e-35 154.1 318 41.8
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 2.6e-35 153.7 352 39.8
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 4.4e-35 152.9 328 41.2
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 7.5e-35 152.1 313 39.9
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 3.7e-34 149.8 354 38.7
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 4.9e-34 149.4 311 44.1
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 8.3e-34 148.7 333 40.8
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 8.3e-34 148.7 337 38.9
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.4e-33 147.1 303 38.3
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.1e-33 146.4 265 42.6
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.2e-32 144.8 309 39.8
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.6e-32 144.4 306 41.8
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.7e-32 143.7 254 42.5
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 3.5e-32 143.3 355 36.3
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.3e-31 141.4 302 40.1
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 3.0e-31 140.2 350 42.3
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 3.0e-31 140.2 339 42.2
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.9e-31 139.8 255 39.6
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 5.0e-31 139.4 367 38.4
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 8.6e-31 138.7 330 34.2
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 4.3e-30 136.3 312 39.1
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 7.3e-30 135.6 337 40.7
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 9.5e-30 135.2 303 39.3
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.6e-29 134.4 259 38.6
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 2.8e-29 133.7 326 39.0
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 6.2e-29 132.5 389 34.7
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 6.2e-29 132.5 296 39.5
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 1.8e-28 131.0 335 40.6
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.3e-28 130.6 312 39.7
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 8.9e-28 128.6 340 35.3
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 8.9e-28 128.6 340 35.3
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 8.9e-28 128.6 303 38.9
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 2.6e-27 127.1 302 38.7
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 3.4e-27 126.7 347 38.3
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 7.5e-27 125.6 275 39.6
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.5e-27 125.6 334 38.9
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 9.8e-27 125.2 301 37.2
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 4.9e-26 122.9 298 38.3
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 6.4e-26 122.5 336 36.0
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 8.3e-26 122.1 326 38.3
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-25 121.7 298 38.9
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 3.2e-25 120.2 328 36.3
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 4.1e-25 119.8 308 36.7
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.2e-24 118.2 359 37.9
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 2.7e-24 117.1 314 41.4
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.6e-23 112.1 252 41.3
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 8.6e-23 112.1 332 37.7
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.1e-22 111.7 307 40.4
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 1.9e-22 110.9 180 43.3
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 4.3e-22 109.8 381 32.8
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.3e-22 109.0 335 38.5
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.2e-21 108.2 311 37.6
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.6e-21 107.8 302 32.8
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.6e-21 107.8 290 35.5
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 2.8e-21 107.1 255 35.7
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 4.7e-21 106.3 214 39.7
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.4e-20 104.8 212 41.0
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.8e-19 99.4 252 40.9
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 7.5e-19 99.0 220 40.9
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 6.4e-18 95.9 240 43.3
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.4e-17 92.8 256 35.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 5.4e-17 92.8 256 35.5
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.7e-16 90.5 322 33.5
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 2.7e-16 90.5 298 32.2
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 4.6e-16 89.7 97 50.5
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 2.3e-15 87.4 139 46.8
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.6e-15 85.9 231 35.5
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.1e-14 85.1 336 33.0
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.9e-14 84.3 313 31.3
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 6.8e-12 75.9 299 29.4
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.1e-09 68.6 128 43.8
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 1.4e-09 68.2 232 32.3
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.9e-09 67.8 137 36.5
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.1e-09 65.9 312 30.8
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 7.1e-09 65.9 190 36.3
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 1.2e-08 65.1 343 28.0
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 3.5e-08 63.5 331 29.3
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.5e-08 63.5 365 27.7
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 4.6e-08 63.2 340 28.8
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 4.6e-08 63.2 359 27.9
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 4.6e-08 63.2 270 29.6
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 6.0e-08 62.8 70 52.9
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 2.3e-07 60.8 326 26.4
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 5.1e-07 59.7 289 26.0
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 6.6e-07 59.3 288 27.1
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 8.6e-07 58.9 130 40.8
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 1.5e-06 58.2 324 27.2
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.5e-06 58.2 95 46.3
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.5e-06 58.2 325 28.0
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 1.9e-06 57.8 361 27.1
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.5e-06 57.4 347 25.6
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 3.3e-06 57.0 297 28.6
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 3.3e-06 57.0 357 24.9
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 3.3e-06 57.0 377 25.5
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 3.3e-06 57.0 313 26.5
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 4.3e-06 56.6 358 26.3
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 5.6e-06 56.2 266 25.2
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 7.3e-06 55.8 363 26.4
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 9.6e-06 55.5 290 25.5


User provided reference genes

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