Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 2.2e-79 298.9 151 100.0
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 3.4e-32 142.1 98 77.6
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 9.4e-30 134.0 99 74.7
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.2e-29 133.7 99 73.7
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.7e-29 132.5 99 73.7
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.7e-29 132.5 99 73.7
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 6.1e-29 131.3 105 69.5
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 7.9e-29 131.0 99 72.7
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.0e-28 130.6 99 71.7
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.0e-28 130.6 99 72.7
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.4e-28 130.2 99 71.7
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.4e-28 130.2 99 71.7
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.8e-28 129.8 99 71.7
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 8.8e-28 127.5 99 69.7
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 5.7e-27 124.8 79 82.3
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 5.7e-27 124.8 99 67.7
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.4e-25 120.2 99 63.6
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.4e-25 120.2 99 63.6
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 2.4e-25 119.4 99 62.6
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 4.1e-25 118.6 100 64.0
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 4.1e-25 118.6 99 60.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 9.1e-25 117.5 100 64.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 1.2e-24 117.1 99 60.6
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 1.2e-24 117.1 99 60.6
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.2e-24 117.1 99 61.6
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.5e-24 116.7 99 61.6
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 1.5e-24 116.7 99 60.6
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 1.5e-24 116.7 99 61.6
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 2.0e-24 116.3 99 59.6
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 2.0e-24 116.3 99 60.6
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 3.4e-24 115.5 99 59.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 4.5e-24 115.2 99 59.6
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 4.5e-24 115.2 99 60.6
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 4.5e-24 115.2 99 60.6
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 5.9e-24 114.8 100 62.0
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 5.9e-24 114.8 99 60.6
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.0e-23 114.0 99 59.6
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.0e-23 114.0 99 59.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.0e-23 114.0 99 57.6
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 1.0e-23 114.0 99 60.6
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.3e-23 113.6 99 58.6
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.3e-23 113.6 99 58.6
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.3e-23 113.6 99 59.6
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 1.7e-23 113.2 99 57.6
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.7e-23 113.2 99 58.6
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 2.2e-23 112.8 99 58.6
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 59.6
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 59.6
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 59.6
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 60.6
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 59.6
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 59.6
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 59.6
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 2.9e-23 112.5 99 61.6
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 3.8e-23 112.1 99 57.6
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 3.8e-23 112.1 99 59.6
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 3.8e-23 112.1 99 58.6
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 5.0e-23 111.7 99 57.6
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 5.0e-23 111.7 99 56.6
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 5.0e-23 111.7 99 56.6
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 5.0e-23 111.7 99 56.6
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 5.0e-23 111.7 99 56.6
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 6.5e-23 111.3 99 58.6
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 8.5e-23 110.9 99 59.6
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 8.5e-23 110.9 99 58.6
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.1e-22 110.5 80 67.5
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.1e-22 110.5 99 60.6
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.1e-22 110.5 99 60.6
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.1e-22 110.5 99 60.6
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 1.1e-22 110.5 79 70.9
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.4e-22 110.2 79 67.1
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.4e-22 110.2 99 57.6
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 1.9e-22 109.8 100 58.0
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.9e-22 109.8 78 66.7
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 1.9e-22 109.8 99 56.6
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 7.2e-22 107.8 80 65.0
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 7.2e-22 107.8 99 55.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.2e-21 107.1 79 67.1
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.2e-21 107.1 78 65.4
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.6e-21 106.7 99 55.6
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 2.1e-21 106.3 99 54.5
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 2.7e-21 105.9 93 60.2
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 3.6e-21 105.5 99 55.6
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 6.1e-21 104.8 92 59.8
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 6.1e-21 104.8 85 61.2
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 6.1e-21 104.8 79 62.0
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 1.0e-20 104.0 79 62.0
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.0e-20 104.0 103 55.3
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.4e-20 103.6 100 57.0
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.4e-20 103.6 79 64.6
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.8e-20 103.2 79 63.3
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 1.8e-20 103.2 81 60.5
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.3e-20 102.8 127 44.9
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 2.3e-20 102.8 79 68.4
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 3.0e-20 102.4 99 52.5
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 3.9e-20 102.1 77 62.3
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 3.9e-20 102.1 79 62.0
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 3.9e-20 102.1 79 63.3
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 1.5e-19 100.1 79 62.0
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 5.7e-19 98.2 79 57.0
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 3.7e-18 95.5 79 58.2
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 6.3e-18 94.7 93 53.8
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 6.3e-18 94.7 79 62.0
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.8e-17 93.2 79 58.2
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 7.0e-17 91.3 79 57.0
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.2e-16 90.5 76 55.3
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.6e-13 80.1 55 65.5
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.0e-12 77.4 79 46.8
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.4e-12 77.0 70 54.3
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.4e-12 77.0 70 54.3
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 4.0e-12 75.5 47 78.7
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.3e-11 72.4 46 73.9
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 3.7e-10 68.9 79 49.4
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 3.1e-09 65.9 80 43.8
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 3.5e-08 62.4 95 42.1
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 1.0e-07 60.8 29 93.1
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 1.3e-07 60.5 80 36.2
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.9e-06 56.6 105 32.4
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 7.2e-06 54.7 58 53.4


User provided reference genes

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