Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 3.6e-64 248.1 122 100.0
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 1.7e-50 202.6 99 98.0
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 8.9e-47 190.3 99 88.9
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 1.2e-46 189.9 99 90.9
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 1.2e-46 189.9 99 90.9
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 1.2e-46 189.9 99 90.9
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 3.4e-46 188.3 99 89.9
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 3.7e-45 184.9 99 89.9
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.9e-44 182.6 99 87.9
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 9.2e-44 180.3 99 86.9
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 1.3e-42 176.4 99 86.9
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.2e-39 164.5 99 78.8
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 8.6e-34 147.1 104 75.0
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.7e-26 122.9 79 77.2
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.9e-21 105.5 102 55.9
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 4.2e-20 101.7 120 47.5
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 7.1e-20 100.9 120 51.7
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 2.7e-19 99.0 98 55.1
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 2.7e-19 99.0 104 53.8
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 7.9e-19 97.4 93 53.8
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 1.0e-18 97.1 94 50.0
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 1.0e-18 97.1 94 50.0
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 1.0e-18 97.1 94 50.0
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 1.0e-18 97.1 94 50.0
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 1.0e-18 97.1 94 50.0
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 1.0e-18 97.1 94 51.1
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.0e-18 97.1 104 52.9
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.0e-18 97.1 111 51.4
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 1.7e-18 96.3 96 53.1
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 1.7e-18 96.3 96 53.1
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 1.7e-18 96.3 96 53.1
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 1.7e-18 96.3 98 56.1
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.3e-18 95.9 94 51.1
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 2.3e-18 95.9 94 50.0
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 3.0e-18 95.5 94 51.1
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 3.0e-18 95.5 94 51.1
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 3.0e-18 95.5 106 54.7
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 5.1e-18 94.7 96 52.1
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 6.6e-18 94.4 96 52.1
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 6.6e-18 94.4 96 52.1
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 6.6e-18 94.4 110 50.9
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.1e-17 93.6 110 50.0
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 1.1e-17 93.6 108 52.8
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 1.1e-17 93.6 104 44.2
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.1e-17 93.6 106 48.1
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 1.1e-17 93.6 105 50.5
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 1.5e-17 93.2 103 52.4
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.5e-17 93.2 106 47.2
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.5e-17 93.2 106 47.2
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.9e-17 92.8 94 52.1
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 3.3e-17 92.0 109 51.4
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 3.3e-17 92.0 109 51.4
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 3.3e-17 92.0 102 50.0
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 3.3e-17 92.0 104 48.1
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 4.3e-17 91.7 107 47.7
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 4.3e-17 91.7 98 52.0
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 5.6e-17 91.3 109 47.7
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 5.6e-17 91.3 107 46.7
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 5.6e-17 91.3 108 50.0
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.3e-17 90.9 104 49.0
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 7.3e-17 90.9 107 48.6
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 7.3e-17 90.9 100 51.0
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 7.3e-17 90.9 103 49.5
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 7.3e-17 90.9 110 49.1
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 9.6e-17 90.5 113 46.9
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 1.3e-16 90.1 116 44.8
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 1.3e-16 90.1 112 47.3
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.6e-16 89.7 95 49.5
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.6e-16 89.7 95 49.5
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.6e-16 89.7 120 47.5
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 2.1e-16 89.4 106 49.1
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 2.8e-16 89.0 98 50.0
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 3.6e-16 88.6 111 45.0
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 3.6e-16 88.6 100 49.0
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 4.8e-16 88.2 110 45.5
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 4.8e-16 88.2 103 49.5
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 6.2e-16 87.8 106 47.2
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 6.2e-16 87.8 106 47.2
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 6.2e-16 87.8 111 46.8
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 6.2e-16 87.8 108 44.4
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 6.2e-16 87.8 108 46.3
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 6.2e-16 87.8 104 51.0
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 6.2e-16 87.8 110 48.2
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 6.2e-16 87.8 102 50.0
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 8.1e-16 87.4 108 44.4
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 8.1e-16 87.4 108 44.4
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 8.1e-16 87.4 108 44.4
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 8.1e-16 87.4 108 50.9
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 8.1e-16 87.4 108 50.9
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 1.8e-15 86.3 107 46.7
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 1.8e-15 86.3 106 50.0
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.8e-15 86.3 110 49.1
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 2.4e-15 85.9 104 43.3
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 2.4e-15 85.9 104 43.3
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 2.4e-15 85.9 115 43.5
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 4.0e-15 85.1 107 49.5
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 4.0e-15 85.1 106 50.0
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 5.3e-15 84.7 107 48.6
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 5.3e-15 84.7 105 51.4
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 5.3e-15 84.7 105 51.4
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 5.3e-15 84.7 105 51.4
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 5.3e-15 84.7 111 47.7
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 5.3e-15 84.7 110 43.6
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 6.9e-15 84.3 94 45.7
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 9.0e-15 84.0 113 44.2
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 1.2e-14 83.6 108 45.4
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 1.2e-14 83.6 106 50.0
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 1.5e-14 83.2 118 44.1
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 1.5e-14 83.2 106 44.3
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 2.0e-14 82.8 106 45.3
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 2.6e-14 82.4 123 45.5
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 2.6e-14 82.4 107 46.7
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 2.6e-14 82.4 108 46.3
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.6e-14 82.4 109 44.0
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 2.6e-14 82.4 100 50.0
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 2.6e-14 82.4 107 46.7
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 3.4e-14 82.0 106 47.2
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 4.5e-14 81.6 105 45.7
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 4.5e-14 81.6 107 48.6
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 4.5e-14 81.6 110 47.3
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 5.8e-14 81.3 105 44.8
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 5.8e-14 81.3 101 49.5
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 5.8e-14 81.3 116 40.5
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 5.8e-14 81.3 101 46.5
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 7.6e-14 80.9 115 49.6
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 7.6e-14 80.9 112 45.5
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 7.6e-14 80.9 109 45.0
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 7.6e-14 80.9 101 47.5
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 7.6e-14 80.9 105 43.8
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 1.3e-13 80.1 106 45.3
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 1.7e-13 79.7 112 42.0
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 1.7e-13 79.7 107 46.7
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 2.2e-13 79.3 105 41.9
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 2.2e-13 79.3 106 44.3
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 3.8e-13 78.6 108 43.5
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 3.8e-13 78.6 110 49.1
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.8e-13 78.6 105 45.7
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.8e-13 78.6 105 45.7
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 6.4e-13 77.8 107 44.9
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 8.4e-13 77.4 111 42.3
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 1.4e-12 76.6 108 44.4
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.4e-12 76.6 108 44.4
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.9e-12 76.3 110 42.7
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 1.9e-12 76.3 97 45.4
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 2.4e-12 75.9 105 41.0
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 3.2e-12 75.5 104 47.1
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 4.2e-12 75.1 108 43.5
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 4.2e-12 75.1 107 45.8
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 4.2e-12 75.1 113 41.6
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 5.4e-12 74.7 105 41.0
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 5.4e-12 74.7 115 47.8
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 5.4e-12 74.7 107 44.9
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 7.1e-12 74.3 104 42.3
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 9.3e-12 73.9 96 45.8
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 9.3e-12 73.9 106 42.5
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 1.2e-11 73.6 110 41.8
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 2.7e-11 72.4 112 41.1
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 2.7e-11 72.4 112 42.9
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 4.6e-11 71.6 105 41.9
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 4.6e-11 71.6 123 42.3
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 6.0e-11 71.2 108 43.5
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 7.9e-11 70.9 56 58.9
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 7.9e-11 70.9 98 40.8
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 7.9e-11 70.9 108 43.5
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 1.0e-10 70.5 105 38.1
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 1.3e-10 70.1 113 38.9
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 3.0e-10 68.9 109 36.7
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 1.1e-09 67.0 99 46.5
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 1.1e-09 67.0 111 39.6
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 1.5e-09 66.6 101 37.6
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 3.3e-09 65.5 115 38.3
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 4.3e-09 65.1 116 39.7
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 2.8e-08 62.4 137 33.6
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 8.1e-08 60.8 103 38.8
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 2.4e-07 59.3 135 36.3
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.6e-06 55.8 148 32.4
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 2.6e-06 55.8 146 33.6


User provided reference genes

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