Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 1.8e-166 589.3 330 100.0
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 3.4e-109 399.1 360 69.7
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 4.9e-108 395.2 348 71.6
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-102 377.1 344 70.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.8e-97 360.1 343 66.5
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 2.5e-96 356.3 357 66.4
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.6e-95 353.6 345 67.0
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-94 350.9 344 66.3
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 5.3e-94 348.6 349 64.5
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 5.3e-94 348.6 349 64.5
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-93 347.4 349 64.5
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 6.1e-90 335.1 360 61.7
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 2.8e-87 326.2 333 61.0
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 6.3e-87 325.1 343 62.4
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 8.2e-87 324.7 333 60.7
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 6.9e-86 321.6 351 60.4
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 2.0e-85 320.1 333 60.7
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 6.5e-84 315.1 332 60.8
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.1e-78 295.8 342 59.6
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-77 294.3 280 68.9
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 3.6e-74 282.7 346 59.8
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 6.1e-74 282.0 349 57.3
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 6.3e-71 271.9 264 68.2
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-70 270.4 330 56.4
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.1e-43 181.4 373 43.2
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 3.0e-41 173.3 369 42.3
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-41 172.6 368 42.7
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 3.2e-38 163.3 398 38.4
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 5.9e-37 159.1 375 40.5
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 5.0e-36 156.0 414 37.0
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 5.0e-36 156.0 414 37.0
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 8.6e-36 155.2 397 38.3
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 1.1e-35 154.8 428 36.7
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.5e-35 154.5 392 39.0
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-35 153.7 412 36.9
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 4.3e-35 152.9 352 42.3
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 2.8e-34 150.2 386 38.6
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 6.2e-34 149.1 375 40.5
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 1.0e-33 148.3 349 41.5
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 1.0e-33 148.3 349 41.5
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.1e-33 146.7 394 38.3
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-33 146.0 352 41.5
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-33 146.0 413 36.8
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 5.2e-33 146.0 352 41.5
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 5.2e-33 146.0 423 37.8
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 8.9e-33 145.2 411 37.2
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.2e-32 144.8 399 37.1
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 2.2e-31 140.6 427 35.6
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.4e-30 137.1 409 36.9
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 9.2e-30 135.2 409 35.7
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.3e-27 126.7 424 34.7
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 3.0e-20 103.6 190 39.5
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.9e-20 103.2 186 41.4
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 9.5e-19 98.6 193 39.9
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 6.2e-18 95.9 194 39.7
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 1.1e-17 95.1 188 39.9
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.4e-17 94.7 188 39.4
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.3e-17 94.0 182 39.0
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 6.8e-17 92.4 205 39.0
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 6.8e-17 92.4 180 37.2
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 6.8e-17 92.4 160 41.9
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.2e-16 91.7 184 38.0
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.5e-16 91.3 199 36.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 2.0e-16 90.9 188 38.8
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 3.4e-16 90.1 164 43.3
BolC7t43237H Brassica oleracea HOM05D004305 ORTHO05D005159 4.4e-16 89.7 64 78.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 5.8e-16 89.4 163 39.9
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 7.6e-16 89.0 176 38.6
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.9e-16 88.6 211 37.4
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.3e-15 88.2 162 39.5
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 2.2e-15 87.4 419 25.3
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 3.7e-15 86.7 206 37.4
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 4.9e-15 86.3 197 36.5
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 6.4e-15 85.9 186 38.2
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 8.4e-15 85.5 185 38.4
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.4e-14 84.7 385 28.8
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.9e-14 84.3 185 40.5
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.9e-14 84.3 170 40.0
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 2.4e-14 84.0 184 39.7
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 2.4e-14 84.0 188 36.2
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 3.2e-14 83.6 334 29.9
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 7.1e-14 82.4 333 29.1
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 7.1e-14 82.4 334 29.6
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 7.1e-14 82.4 179 36.9
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 9.2e-14 82.0 166 38.6
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 9.2e-14 82.0 185 40.0
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.1e-13 80.9 185 38.9
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.7e-13 80.5 212 34.9
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 3.5e-13 80.1 180 36.1
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 4.6e-13 79.7 208 36.5
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 7.8e-13 79.0 213 35.7
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 7.8e-13 79.0 364 28.3
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.3e-12 78.2 65 56.9
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.3e-12 78.2 188 33.5
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.3e-12 78.2 195 33.8
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.7e-12 77.8 205 36.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.3e-12 77.4 201 33.3
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 3.0e-12 77.0 193 34.2
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.9e-12 76.6 176 36.9
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 5.1e-12 76.3 185 36.2
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 5.1e-12 76.3 425 26.1
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 5.1e-12 76.3 179 36.3
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 5.1e-12 76.3 368 28.8
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 6.6e-12 75.9 179 39.1
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 6.6e-12 75.9 228 33.3
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.5e-11 74.7 182 36.8
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.9e-11 74.3 169 36.1
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.9e-11 74.3 425 25.6
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.9e-11 74.3 378 27.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.3e-11 73.6 77 50.6
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 3.3e-11 73.6 115 41.7
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 3.3e-11 73.6 214 31.8
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 5.6e-11 72.8 362 28.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 5.6e-11 72.8 171 37.4
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 7.3e-11 72.4 169 37.3
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 1.2e-10 71.6 385 29.4
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.2e-10 71.6 197 33.0
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.1e-10 70.9 164 38.4
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 3.6e-10 70.1 283 30.0
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.7e-10 69.7 76 53.9
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 6.2e-10 69.3 252 32.1
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 8.1e-10 68.9 162 38.3
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 1.1e-09 68.6 387 29.2
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 1.4e-09 68.2 174 36.2
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 3.1e-09 67.0 187 35.8
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 4.0e-09 66.6 390 27.7
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.5e-08 64.7 191 33.0
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 2.0e-08 64.3 59 54.2
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.6e-08 63.9 305 28.2
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.6e-08 63.9 367 28.9
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 2.6e-08 63.9 191 33.0
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 2.6e-08 63.9 355 27.6
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 3.4e-08 63.5 58 60.3
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 4.4e-08 63.2 188 31.9
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 4.4e-08 63.2 174 35.1
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 7.6e-08 62.4 186 32.8
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 1.7e-07 61.2 353 25.8
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 2.2e-07 60.8 357 27.7
C07p27070 Brassica napus HOM05D004305 ORTHO05D005159 3.8e-07 60.1 58 63.8
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 4.9e-07 59.7 159 33.3
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 8.4e-07 58.9 182 30.2
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 8.4e-07 58.9 173 33.5
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.1e-06 58.5 222 29.7
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.4e-06 58.2 397 27.2
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.9e-06 57.8 53 56.6
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 5.4e-06 56.2 338 27.2


User provided reference genes

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