Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1378.6 711 100.0
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1300.4 711 94.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1300.0 711 94.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1294.6 705 95.3
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1294.6 705 95.3
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1294.6 705 95.3
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1233.4 701 89.9
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1228.8 701 89.7
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1228.4 705 89.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1224.2 701 89.4
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1223.8 701 89.3
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1223.4 701 89.3
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 700 89.3
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1220.3 701 89.2
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1209.9 702 87.7
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1208.0 701 87.7
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1204.9 702 87.7
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1185.6 701 86.4
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 0.0e+00 1161.4 703 85.2
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1104.7 699 79.5
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 712 76.8
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 706 77.6
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 704 78.4
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1098.6 699 78.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1097.8 699 78.4
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1096.3 710 76.8
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1096.3 707 77.2
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1095.1 703 78.8
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 706 77.2
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1092.8 700 78.4
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 700 77.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 706 77.2
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 700 77.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 699 77.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1087.8 700 77.7
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1087.4 704 78.3
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 705 76.9
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1084.7 705 77.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1084.3 703 78.1
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1084.3 708 76.7
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1083.6 700 77.1
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1083.6 703 77.5
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1082.4 698 77.1
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1082.4 703 77.4
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1080.5 699 77.8
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1080.5 700 76.6
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 700 76.0
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 699 78.1
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1078.9 703 76.4
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1078.2 700 77.3
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1078.2 699 77.7
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1078.2 703 77.4
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1077.8 699 77.0
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1077.4 715 76.5
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1077.4 702 76.2
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1077.0 713 75.7
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1077.0 700 77.4
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1075.8 706 76.6
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 4.9e-312 1074.7 705 76.5
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 4.9e-312 1074.7 696 77.2
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 2.4e-311 1071.6 699 75.7
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 3.4e-311 1071.2 703 76.0
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 5.8e-311 1070.5 704 76.4
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 1.3e-310 1069.3 699 75.7
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.3e-310 1069.3 700 77.3
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 2.1e-310 1068.5 697 76.6
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 2.8e-310 1068.1 700 75.9
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 5.9e-308 1060.4 687 77.3
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.9e-307 1058.1 707 76.8
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.9e-307 1058.1 703 73.8
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 8.5e-307 1056.6 728 73.5
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.9e-306 1055.4 700 75.0
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.5e-306 1055.0 704 76.7
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 7.9e-305 1050.0 705 74.9
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 7.9e-305 1050.0 705 74.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.0e-304 1048.1 699 75.1
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.6e-303 1045.0 696 75.1
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.4e-303 1043.5 697 74.9
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.8e-301 1038.9 707 74.8
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.0e-296 1021.5 704 74.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 6.7e-296 1020.4 702 74.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 3.3e-295 1018.1 690 74.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.3e-294 1016.1 708 73.9
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 2.8e-294 1015.0 701 73.9
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 3.5e-292 1008.1 702 73.4
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 4.5e-292 1007.7 709 73.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.1e-290 1003.0 677 75.5
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.7e-289 998.4 691 73.7
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.0e-288 996.5 704 71.9
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.3e-288 995.3 720 72.2
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 5.7e-287 990.7 659 76.0
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.1e-285 983.4 733 70.4
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.3e-283 979.5 613 80.6
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.5e-282 975.3 702 70.5
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.5e-282 974.2 702 70.7
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 2.7e-281 971.8 674 74.5
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 4.7e-281 971.1 620 78.7
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.8e-280 969.1 664 75.3
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 8.8e-280 966.8 695 70.1
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.0e-279 965.7 692 72.5
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 6.1e-273 944.1 707 70.0
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.4e-271 937.9 641 73.0
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.3e-267 925.6 587 80.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 7.5e-263 910.6 701 68.2
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 8.0e-257 890.6 699 65.5
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.6e-255 885.6 545 82.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.4e-253 879.8 570 78.6
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-248 863.2 731 63.9
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 4.6e-244 848.2 701 63.8
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 3.4e-239 832.0 699 63.9
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 8.1e-233 810.8 726 61.4
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.7e-227 793.1 534 76.4
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-225 786.2 572 69.4
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.8e-219 766.5 526 73.2
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 7.9e-212 741.1 448 84.6
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 6.3e-201 704.9 684 53.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.1e-200 702.2 630 57.0
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 2.7e-188 662.9 612 59.5
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.0e-183 646.7 402 80.8
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.1e-181 641.0 392 81.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.5e-181 639.8 555 64.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 9.1e-168 594.7 623 48.8
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.9e-165 587.0 642 47.2
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.6e-158 561.6 643 47.0
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.3e-157 558.5 521 59.7
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.2e-144 515.0 397 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.3e-139 500.4 627 43.2
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.4e-138 496.1 631 41.7
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.7e-137 493.0 640 42.5
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.7e-127 460.3 627 42.7
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.6e-117 425.2 307 68.4
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 3.4e-114 416.8 709 37.5
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.5e-104 382.9 399 52.1
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.0e-102 377.1 245 78.8
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-92 344.0 399 51.4
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 6.3e-76 289.7 223 60.5
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.4e-69 266.9 224 63.8
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 8.0e-55 219.5 123 82.9
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.1e-51 206.1 171 66.1
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.4e-35 153.7 133 51.9
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.9e-28 131.3 78 82.1
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 3.0e-25 121.3 101 59.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 3.9e-25 120.9 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.1e-23 115.2 59 88.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 5.8e-21 107.1 92 56.5
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 9.5e-16 89.7 56 73.2
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.3e-09 68.6 60 58.3
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 7.3e-08 63.5 55 52.7
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 7.3e-08 63.5 55 52.7
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 8.1e-07 60.1 30 80.0
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 9.0e-06 56.6 51 49.0


User provided reference genes

Program Settings