Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30452 Brassica carinata HOM05D000169 ORTHO05D004780 2.4e-75 285.4 146 100.0
BcaB07g30448 Brassica carinata HOM05D000169 ORTHO05D004780 3.0e-41 172.2 116 81.0
BcaB07g30450 Brassica carinata HOM05D000169 ORTHO05D004780 2.8e-39 165.6 111 81.1
BcaB06g25712 Brassica carinata HOM05D000169 ORTHO05D004780 8.8e-17 90.9 81 65.4
A05p33330 Brassica napus HOM05D000169 ORTHO05D004780 1.5e-16 90.1 85 64.7
A01p37930 Brassica napus HOM05D000169 ORTHO05D004780 2.6e-16 89.4 81 64.2
BraA05t22158Z Brassica rapa HOM05D000169 ORTHO05D004780 2.6e-16 89.4 113 53.1
C05p50330 Brassica napus HOM05D000169 ORTHO05D004780 3.3e-16 89.0 85 63.5
Sp3g14530 Schrenkiella parvula HOM05D000169 ORTHO05D004780 4.4e-16 88.6 81 63.0
BolC1t04779H Brassica oleracea HOM05D000169 ORTHO05D004780 5.7e-16 88.2 82 64.6
Thhalv10020466m.g Eutrema salsugineum HOM05D000169 ORTHO05D004780 9.7e-16 87.4 85 62.4
BolC5t33782H Brassica oleracea HOM05D000169 ORTHO05D004780 2.2e-15 86.3 85 62.4
AL3G28850 Arabidopsis lyrata HOM05D000169 ORTHO05D004780 2.8e-15 85.9 85 60.0
BraA01t03853Z Brassica rapa HOM05D000169 ORTHO05D004780 2.8e-15 85.9 81 61.7
Carub.0003s1591 Capsella rubella HOM05D000169 ORTHO05D004780 2.8e-15 85.9 85 61.2
CARHR091330 Cardamine hirsuta HOM05D000169 ORTHO05D004780 6.3e-15 84.7 109 49.5
AT3G16170 Arabidopsis thaliana HOM05D000169 ORTHO05D004780 1.1e-14 84.0 114 49.1
Migut.I00934 Erythranthe guttata HOM05D000169 ORTHO05D004780 5.3e-14 81.6 79 59.5
Aa31LG8G3300 Aethionema arabicum HOM05D000169 ORTHO05D004780 7.0e-14 81.3 85 57.6
MSTRG.11049 Avicennia marina HOM05D000169 ORTHO05D004780 7.0e-14 81.3 79 54.4
Sc15g0002130 Simmondsia chinensis HOM05D000169 ORTHO05D004780 1.2e-13 80.5 163 37.4
QL05p021511 Quercus lobata HOM05D000169 ORTHO05D004780 2.0e-13 79.7 90 52.2
arahy.Tifrunner.gnm1.ann1.4P55VP Arachis hypogaea HOM05D000169 ORTHO05D004780 2.6e-13 79.3 131 42.7
COL.COLO4_30442 Corchorus olitorius HOM05D000169 ORTHO05D004780 3.5e-13 79.0 104 46.2
Oeu000461.2 Olea europaea HOM05D000169 ORTHO05D004780 3.5e-13 79.0 151 40.4
ClCG10G006410 Citrullus lanatus HOM05D000169 ORTHO05D004780 4.5e-13 78.6 81 55.6
Gohir.A10G081900 Gossypium hirsutum HOM05D000169 ORTHO05D004780 4.5e-13 78.6 122 40.2
Thecc.06G093200 Theobroma cacao HOM05D000169 ORTHO05D004780 5.9e-13 78.2 104 45.2
TPR.G5245 Trifolium pratense HOM05D000169 ORTHO05D004780 5.9e-13 78.2 79 57.0
Atru.chr1.3409_Atru.chr1.3410 Acer truncatum HOM05D000169 ORTHO05D004780 1.0e-12 77.4 162 35.2
Gohir.D10G069600 Gossypium hirsutum HOM05D000169 ORTHO05D004780 1.0e-12 77.4 79 55.7
Gorai.011G073700 Gossypium raimondii HOM05D000169 ORTHO05D004780 1.0e-12 77.4 79 55.7
Sed0000326 Sechium edule HOM05D000169 ORTHO05D004780 1.0e-12 77.4 81 55.6
Duzib160G0343 Durio zibethinus HOM05D000169 ORTHO05D004780 1.3e-12 77.0 104 44.2
arahy.Tifrunner.gnm1.ann1.5X7XAP Arachis hypogaea HOM05D000169 ORTHO05D004780 1.7e-12 76.6 79 55.7
CSS0039624 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D004780 1.7e-12 76.6 79 58.2
MELO3C016565.2 Cucumis melo HOM05D000169 ORTHO05D004780 1.7e-12 76.6 81 54.3
CsaV3_3G005890 Cucumis sativus L. HOM05D000169 ORTHO05D004780 1.7e-12 76.6 81 54.3
Oeu033511.1 Olea europaea HOM05D000169 ORTHO05D004780 1.7e-12 76.6 79 60.8
THA.LOC104817978 Tarenaya hassleriana HOM05D000169 ORTHO05D004780 1.7e-12 76.6 85 55.3
Cpa.g.sc296.4 Carica papaya HOM05D000169 ORTHO05D004780 2.2e-12 76.3 63 60.3
Lj5A57T75 Lonicera japonica HOM05D000169 ORTHO05D004780 2.2e-12 76.3 103 46.6
Medtr4g011790 Medicago truncatula HOM05D000169 ORTHO05D004780 2.9e-12 75.9 79 58.2
TPR.G27504 Trifolium pratense HOM05D000169 ORTHO05D004780 2.9e-12 75.9 54 70.4
TPR.G38605 Trifolium pratense HOM05D000169 ORTHO05D004780 2.9e-12 75.9 54 70.4
Ca_20416_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 3.8e-12 75.5 79 58.2
GSVIVG01017056001 Vitis vinifera HOM05D000169 ORTHO05D004780 3.8e-12 75.5 83 54.2
SalBow2G1665 Salvia bowleyana HOM05D000169 ORTHO05D004780 5.0e-12 75.1 79 55.7
Haze_16349 Corylus avellana HOM05D000169 ORTHO05D004780 6.5e-12 74.7 88 50.0
FAN05G1415 Fragaria x ananassa HOM05D000169 ORTHO05D004780 6.5e-12 74.7 82 56.1
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 6.5e-12 74.7 54 66.7
Psat7g253800 Pisum sativum HOM05D000169 ORTHO05D004780 6.5e-12 74.7 79 55.7
Eucgr.J02955 Eucalyptus grandis HOM05D000169 ORTHO05D004780 8.5e-12 74.3 79 55.7
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 8.5e-12 74.3 39 87.2
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 1.5e-11 73.6 92 52.2
Cfa002101 Carpinus fangiana HOM05D000169 ORTHO05D004780 1.5e-11 73.6 88 50.0
Hma1.2p1_1195F.1_g265900 Hydrangea macrophylla HOM05D000169 ORTHO05D004780 1.5e-11 73.6 83 55.4
TWI75G0003 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 1.5e-11 73.6 83 54.2
FvH4_6g31860 Fragaria vesca HOM05D000169 ORTHO05D004780 1.9e-11 73.2 82 54.9
FAN14G0873 Fragaria x ananassa HOM05D000169 ORTHO05D004780 1.9e-11 73.2 82 54.9
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 1.9e-11 73.2 66 57.6
TWI12G1479 Tripterygium wilfordii HOM05D000169 ORTHO05D004780 1.9e-11 73.2 39 84.6
Prupe.3G065200 Prunus persica HOM05D000169 ORTHO05D004780 2.5e-11 72.8 71 52.1
PGSC0003DMG400026465 Solanum tuberosum HOM05D000169 ORTHO05D004780 2.5e-11 72.8 84 52.4
Actinidia21686 Actinidia chinensis HOM05D000169 ORTHO05D004780 3.2e-11 72.4 94 44.7
CANSAT56G0566 Cannabis sativa HOM05D000169 ORTHO05D004780 3.2e-11 72.4 39 87.2
Cc04_g02960 Coffea canephora HOM05D000169 ORTHO05D004780 3.2e-11 72.4 79 57.0
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 3.2e-11 72.4 54 64.8
Solyc12g044290.2 Solanum lycopersicum HOM05D000169 ORTHO05D004780 3.2e-11 72.4 84 52.4
SGA_v2.0_scaffold5G02549 Striga asiatica HOM05D000169 ORTHO05D004780 3.2e-11 72.4 79 54.4
Cpa.g.c28291.1 Carica papaya HOM05D000169 ORTHO05D004780 4.2e-11 72.0 112 42.9
CiPaw.02G148300 Carya illinoinensis HOM05D000169 ORTHO05D004780 4.2e-11 72.0 97 47.4
Nitab4.5_0002859g0130 Nicotiana tabacum HOM05D000169 ORTHO05D004780 4.2e-11 72.0 79 53.2
Psat3g156160 Pisum sativum HOM05D000169 ORTHO05D004780 4.2e-11 72.0 79 54.4
RcHm_v2.0_Chr2g0139171 Rosa chinensis HOM05D000169 ORTHO05D004780 4.2e-11 72.0 39 84.6
AUR62011680 Chenopodium quinoa HOM05D000169 ORTHO05D004780 5.5e-11 71.6 153 38.6
AUR62016505 Chenopodium quinoa HOM05D000169 ORTHO05D004780 5.5e-11 71.6 60 66.7
DCAR_026335 Daucus carota HOM05D000169 ORTHO05D004780 5.5e-11 71.6 84 54.8
Lalb_Chr25g0280011 Lupinus albus HOM05D000169 ORTHO05D004780 5.5e-11 71.6 107 45.8
TAR624G1376 Trochodendron aralioides HOM05D000169 ORTHO05D004780 5.5e-11 71.6 93 49.5
Ca_20370_v3 Cicer arietinum L. HOM05D000169 ORTHO05D004780 7.2e-11 71.2 55 61.8
Medtr4g013210 Medicago truncatula HOM05D000169 ORTHO05D004780 7.2e-11 71.2 79 53.2
Nitab4.5_0001968g0110 Nicotiana tabacum HOM05D000169 ORTHO05D004780 7.2e-11 71.2 79 51.9
Potri.001G185500 Populus trichocarpa HOM05D000169 ORTHO05D004780 7.2e-11 71.2 79 53.2
Peaxi162Scf00034g00413 Petunia axillaris HOM05D000169 ORTHO05D004780 9.4e-11 70.9 117 47.9
CAN.G144.5 Capsicum annuum HOM05D000169 ORTHO05D004780 1.2e-10 70.5 39 82.1
CiPaw.01G235100 Carya illinoinensis HOM05D000169 ORTHO05D004780 1.2e-10 70.5 92 47.8
Glyma.07G019100 Glycine max HOM05D000169 ORTHO05D004780 1.2e-10 70.5 79 51.9
EL10Ac9g22056 Beta vulgaris HOM05D000169 ORTHO05D004780 1.6e-10 70.1 39 84.6
CAN.G438.32 Capsicum annuum HOM05D000169 ORTHO05D004780 1.6e-10 70.1 79 53.2
Manes.11G037400 Manihot esculenta HOM05D000169 ORTHO05D004780 1.6e-10 70.1 106 43.4
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 1.6e-10 70.1 53 64.2
Ah.01g021720 Amaranthus hybridus HOM05D000169 ORTHO05D004780 2.7e-10 69.3 87 48.3
Glyma.08G204300 Glycine max HOM05D000169 ORTHO05D004780 2.7e-10 69.3 79 51.9
Sabra01G0154600 Salix brachista HOM05D000169 ORTHO05D004780 2.7e-10 69.3 39 79.5
TAR636G0874 Trochodendron aralioides HOM05D000169 ORTHO05D004780 2.7e-10 69.3 118 40.7
unitig_748.g7432 Utricularia gibba HOM05D000169 ORTHO05D004780 2.7e-10 69.3 77 50.6
vmacro18881 Vaccinium macrocarpon HOM05D000169 ORTHO05D004780 2.7e-10 69.3 79 53.2
HPP92_024579 Vanilla planifolia HOM05D000169 ORTHO05D004780 2.7e-10 69.3 39 79.5
ECA232G3766 Erigeron canadensis HOM05D000169 ORTHO05D004780 3.6e-10 68.9 158 36.7
MD09G1208800 Malus domestica HOM05D000169 ORTHO05D004780 3.6e-10 68.9 56 60.7
Nn2g11670 Nelumbo nucifera HOM05D000169 ORTHO05D004780 3.6e-10 68.9 93 47.3
Nitab4.5_0001315g0060 Nicotiana tabacum HOM05D000169 ORTHO05D004780 3.6e-10 68.9 86 51.2
Nitab4.5_0011683g0010 Nicotiana tabacum HOM05D000169 ORTHO05D004780 3.6e-10 68.9 86 51.2
Zm00001eb152410 Zea mays HOM05D000169 ORTHO05D004780 3.6e-10 68.9 39 82.1
MD17G1190300 Malus domestica HOM05D000169 ORTHO05D004780 4.7e-10 68.6 83 48.2
Ciclev10025185m.g Citrus clementina HOM05D000169 ORTHO05D004780 6.1e-10 68.2 109 41.3
Psat7g253640 Pisum sativum HOM05D000169 ORTHO05D004780 6.1e-10 68.2 106 42.5
ATR0315G057 Amborella trichopoda HOM05D000169 ORTHO05D004780 8.0e-10 67.8 79 53.2
Aqoxy7G01575 Aquilegia oxysepala HOM05D000169 ORTHO05D004780 1.0e-09 67.4 39 79.5
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.0e-09 67.4 90 42.2
HanXRQChr16g0500801 Helianthus annuus HOM05D000169 ORTHO05D004780 1.4e-09 67.0 118 39.0
Lj3g0027736 Lotus japonicus HOM05D000169 ORTHO05D004780 1.4e-09 67.0 79 50.6
PSO566G0043 Papaver somniferum HOM05D000169 ORTHO05D004780 1.4e-09 67.0 39 76.9
Phvul.010G148300 Phaseolus vulgaris HOM05D000169 ORTHO05D004780 1.8e-09 66.6 79 49.4
MBI01_g30862_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D004780 2.3e-09 66.2 39 79.5
PSO782G1073 Papaver somniferum HOM05D000169 ORTHO05D004780 2.3e-09 66.2 39 76.9
Lsat_1_v5_gn_4_103101 Lactuca sativa HOM05D000169 ORTHO05D004780 3.0e-09 65.9 79 51.9
VMungo0331G1448 Vigna mungo HOM05D000169 ORTHO05D004780 3.0e-09 65.9 79 49.4
Hund06638 Selenicereus undatus HOM05D000169 ORTHO05D004780 6.7e-09 64.7 79 49.4
Lsat_1_v5_gn_3_30240 Lactuca sativa HOM05D000169 ORTHO05D004780 8.8e-09 64.3 48 66.7
CDE05G2910 Ceratophyllum demersum HOM05D000169 ORTHO05D004780 2.6e-08 62.8 39 71.8
SHI18051 Sapria himalayana HOM05D000169 ORTHO05D004780 2.6e-08 62.8 81 48.1
SEGI_02233 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 4.4e-08 62.0 60 50.0
SEGI_23005 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 4.4e-08 62.0 60 50.0
SMO203G0257 Selaginella moellendorffii HOM05D000169 ORTHO05D004780 7.5e-08 61.2 66 45.5
Peaxi162Scf00015g00126 Petunia axillaris HOM05D000169 ORTHO05D004780 9.7e-08 60.8 34 79.4
Pp3c1_9430 Physcomitrium patens HOM05D000169 ORTHO05D004780 1.7e-07 60.1 67 44.8
Pp3c19_10110 Physcomitrium patens HOM05D000169 ORTHO05D004780 1.1e-06 57.4 88 40.9
Nitab4.5_0003054g0020 Nicotiana tabacum HOM05D000169 ORTHO05D004780 1.4e-06 57.0 85 43.5
Mapoly0036s0029 Marchantia polymorpha HOM05D000169 ORTHO05D004780 2.4e-06 56.2 87 42.5
SEGI_14736 Sequoiadendron giganteum HOM05D000169 ORTHO05D004780 3.1e-06 55.8 61 45.9


User provided reference genes

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