Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 5.3e-193 677.6 350 100.0
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 1.2e-184 649.8 351 96.9
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 5.3e-177 624.4 351 93.4
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 9.0e-177 623.6 351 93.4
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 4.2e-174 614.8 350 90.9
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-173 613.2 350 92.0
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 1.3e-172 609.8 353 91.8
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 6.3e-170 600.9 350 90.0
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 6.3e-170 600.9 352 89.5
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 1.4e-169 599.7 352 89.5
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.5e-168 596.3 352 89.8
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 1.1e-166 590.1 348 89.4
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.4e-166 589.7 350 88.9
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 1.4e-166 589.7 350 88.3
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 2.9e-159 565.5 352 87.5
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 3.6e-157 558.5 352 86.6
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 1.8e-156 556.2 350 84.3
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 1.1e-155 553.5 350 85.7
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 2.4e-145 519.2 326 84.4
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 8.5e-143 510.8 367 76.6
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 5.7e-131 471.5 361 71.5
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 5.4e-129 464.9 361 72.0
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 9.2e-129 464.2 361 71.7
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.6e-128 463.4 360 71.7
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 6.6e-127 458.0 364 70.1
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 6.6e-127 458.0 363 71.3
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.5e-126 456.1 281 84.0
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 4.3e-126 455.3 318 77.7
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 8.0e-125 451.1 362 69.3
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.0e-124 450.7 359 71.3
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.4e-124 450.3 359 71.3
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 3.0e-124 449.1 360 68.9
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.0e-124 449.1 362 71.3
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 6.8e-124 448.0 312 77.6
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 8.9e-124 447.6 354 69.5
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.5e-123 446.8 366 69.1
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 2.0e-123 446.4 376 68.4
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 9.8e-123 444.1 277 84.5
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 2.2e-122 443.0 350 70.3
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 3.7e-122 442.2 359 68.5
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 4.9e-122 441.8 288 80.6
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.9e-122 441.8 350 70.0
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 6.4e-122 441.4 279 83.5
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 6.4e-122 441.4 321 72.3
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 6.4e-122 441.4 297 79.5
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 6.4e-122 441.4 310 76.5
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 6.4e-122 441.4 303 75.9
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 8.3e-122 441.0 352 69.6
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.1e-121 440.7 352 70.2
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-121 440.7 352 70.2
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-121 440.7 352 70.2
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.9e-121 439.9 360 66.7
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.9e-121 439.9 360 66.7
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 3.2e-121 439.1 279 81.4
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 3.2e-121 439.1 258 86.0
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 3.2e-121 439.1 258 86.0
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 4.1e-121 438.7 289 79.6
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 4.1e-121 438.7 319 75.2
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 5.4e-121 438.3 358 67.3
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 7.0e-121 438.0 361 67.9
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 7.0e-121 438.0 279 81.4
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.6e-120 436.8 312 72.8
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.0e-120 436.4 352 69.0
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 2.7e-120 436.0 320 74.4
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 2.7e-120 436.0 353 69.7
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 2.7e-120 436.0 319 72.1
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 3.5e-120 435.6 358 67.6
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 3.5e-120 435.6 279 80.3
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 4.6e-120 435.3 289 78.9
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 4.6e-120 435.3 277 82.3
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 6.0e-120 434.9 366 69.1
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 6.0e-120 434.9 303 77.2
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 6.0e-120 434.9 349 71.1
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 6.0e-120 434.9 364 67.6
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 7.8e-120 434.5 278 82.0
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 7.8e-120 434.5 291 78.0
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 1.0e-119 434.1 366 68.6
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.0e-119 434.1 279 82.4
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.3e-119 433.7 312 75.0
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.7e-119 433.3 275 81.5
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.7e-119 433.3 369 66.1
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 2.3e-119 433.0 279 81.0
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.0e-119 431.8 283 80.6
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.1e-118 430.6 290 79.0
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 1.5e-118 430.3 277 81.2
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.5e-118 430.3 290 78.6
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.5e-118 430.3 310 72.6
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.5e-118 429.5 274 81.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 2.5e-118 429.5 307 74.3
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 3.3e-118 429.1 290 78.3
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 5.6e-118 428.3 279 81.0
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 5.6e-118 428.3 292 77.7
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 9.5e-118 427.6 256 84.8
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.6e-117 426.8 292 77.4
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.6e-117 426.8 292 77.4
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 2.1e-117 426.4 253 85.8
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.1e-117 426.4 326 70.9
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 2.8e-117 426.0 362 67.1
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 3.6e-117 425.6 286 78.3
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 3.6e-117 425.6 312 73.1
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.1e-116 424.1 334 70.4
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 1.1e-116 424.1 278 79.9
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.4e-116 423.7 307 74.6
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 1.8e-116 423.3 264 84.5
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 2.3e-116 422.9 256 83.2
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 2.3e-116 422.9 363 66.7
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 2.3e-116 422.9 271 81.2
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 4.0e-116 422.2 293 77.1
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 5.2e-116 421.8 357 67.5
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 6.8e-116 421.4 326 70.2
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 4.4e-115 418.7 256 81.6
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 5.8e-115 418.3 360 67.2
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 1.7e-114 416.8 289 76.1
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 2.9e-114 416.0 296 73.6
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 3.7e-114 415.6 362 65.7
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 4.9e-114 415.2 308 71.1
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 3.2e-113 412.5 329 67.2
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 9.2e-113 411.0 253 83.0
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-112 410.6 273 78.4
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 9.5e-110 401.0 280 75.0
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.6e-109 400.2 312 68.9
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.8e-108 396.7 273 76.9
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.8e-108 396.7 258 77.9
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 4.0e-108 395.6 250 80.0
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 5.2e-108 395.2 337 66.2
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 8.9e-108 394.4 378 60.8
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 8.9e-108 394.4 296 73.3
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 3.4e-107 392.5 256 80.1
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 5.8e-107 391.7 272 75.4
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.7e-106 390.2 225 88.0
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 9.2e-105 384.4 277 72.2
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.7e-104 382.9 243 79.8
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.3e-103 379.8 248 79.0
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 3.0e-103 379.4 324 65.4
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.6e-99 366.3 267 71.2
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 3.9e-95 352.4 287 63.1
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 4.0e-92 342.4 291 65.6
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 5.8e-91 338.6 248 70.2
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 6.4e-90 335.1 292 60.6
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 3.5e-88 329.3 198 86.9
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 8.7e-87 324.7 198 85.4
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.5e-86 323.9 212 80.2
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.6e-77 293.9 322 56.8
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 7.4e-70 268.5 155 90.3
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 2.8e-69 266.5 165 86.1
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 1.0e-63 248.1 222 63.5
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.8e-47 194.1 108 93.5
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 1.5e-38 164.5 121 74.4
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.8e-37 159.5 102 81.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.2e-37 158.7 99 82.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 3.6e-32 143.3 111 68.5
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.3e-29 134.8 238 45.0
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.2e-21 107.5 64 90.6
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 3.5e-19 100.1 61 83.6


User provided reference genes

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