Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 7.9e-247 856.7 434 100.0
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 4.8e-204 714.5 448 84.8
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 1.1e-203 713.4 451 84.5
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 4.1e-203 711.4 448 84.4
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 2.2e-201 705.7 445 84.7
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 3.7e-196 688.3 451 81.6
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 6.3e-196 687.6 445 82.7
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 1.2e-194 683.3 445 81.8
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 2.2e-193 679.1 445 80.7
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 3.2e-192 675.2 445 80.4
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 5.4e-187 657.9 446 78.7
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 2.7e-186 655.6 435 78.6
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 3.5e-178 628.6 449 75.9
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 1.8e-174 616.3 444 73.9
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 6.8e-158 561.2 445 65.6
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 3.7e-156 555.4 443 64.1
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.7e-156 555.4 443 64.1
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.4e-155 553.5 443 64.1
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 7.1e-155 551.2 447 65.1
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.7e-153 546.6 443 63.7
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 1.5e-152 543.5 435 64.6
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 4.7e-151 538.5 443 63.0
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 4.0e-150 535.4 443 62.8
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 2.6e-149 532.7 443 62.5
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 5.8e-149 531.6 443 62.5
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 1.3e-148 530.4 440 63.2
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 2.2e-148 529.6 442 63.3
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 2.9e-148 529.3 443 61.9
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 3.8e-148 528.9 450 61.8
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 4.2e-147 525.4 441 61.7
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 5.4e-147 525.0 443 62.3
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 7.1e-147 524.6 486 58.8
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 7.1e-147 524.6 465 59.4
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 2.1e-146 523.1 443 62.1
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 2.7e-146 522.7 448 61.2
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 4.6e-146 521.9 437 61.3
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 4.6e-146 521.9 443 60.5
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 6.0e-146 521.5 441 61.7
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 3.0e-145 519.2 440 61.8
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 2.5e-144 516.2 443 61.2
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 3.3e-144 515.8 446 59.6
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 3.3e-144 515.8 441 61.5
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 1.6e-143 513.5 437 60.6
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 2.8e-143 512.7 443 59.8
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 3.6e-143 512.3 438 62.1
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 6.2e-143 511.5 435 60.2
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 6.2e-143 511.5 436 61.5
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.8e-142 510.0 441 59.9
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 2.4e-142 509.6 435 61.1
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 5.3e-142 508.4 441 60.5
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 9.0e-142 507.7 443 59.6
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 1.2e-141 507.3 442 60.0
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 2.6e-141 506.1 442 59.3
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 5.8e-141 505.0 436 60.3
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 2.2e-140 503.1 435 60.2
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.9e-140 502.7 442 59.3
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 6.4e-140 501.5 436 60.3
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 2.4e-139 499.6 443 58.5
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 3.2e-139 499.2 442 58.8
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 7.8e-138 494.6 451 57.9
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 1.7e-137 493.4 439 58.3
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 5.1e-137 491.9 431 60.1
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 6.6e-137 491.5 443 57.6
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 8.7e-137 491.1 445 58.2
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 1.1e-136 490.7 443 59.6
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 1.1e-136 490.7 439 59.0
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 1.9e-136 490.0 436 58.9
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 1.9e-136 490.0 437 59.0
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 5.6e-136 488.4 452 56.2
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 2.8e-135 486.1 443 57.8
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 8.1e-135 484.6 462 58.7
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.8e-134 483.4 473 57.1
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 1.8e-134 483.4 489 53.4
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 2.4e-134 483.0 409 63.1
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 6.9e-134 481.5 443 58.9
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 6.9e-134 481.5 435 57.9
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 9.9e-133 477.6 488 53.5
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 7.4e-128 461.5 436 56.4
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 1.1e-126 457.6 438 53.4
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 3.4e-125 452.6 482 50.2
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 1.3e-124 450.7 482 52.5
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 9.3e-123 444.5 363 63.6
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 6.7e-121 438.3 471 50.7
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 3.3e-120 436.0 443 54.9
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 7.4e-120 434.9 428 54.2
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 6.2e-119 431.8 428 53.7
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 4.0e-118 429.1 428 53.3
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 6.9e-118 428.3 302 71.9
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.0e-116 424.5 511 48.5
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 5.0e-116 422.2 443 52.8
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.5e-115 419.9 436 51.4
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 7.9e-114 414.8 439 53.5
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 3.3e-112 409.5 429 58.3
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 7.4e-112 408.3 371 59.3
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 1.6e-111 407.1 429 57.6
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 6.3e-111 405.2 269 82.2
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 6.3e-111 405.2 409 53.5
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 3.1e-110 402.9 357 59.1
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 1.0e-105 387.9 343 64.4
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 1.1e-102 377.9 447 46.3
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 1.1e-102 377.9 431 49.0
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 2.0e-96 357.1 348 59.2
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.0e-89 334.7 310 58.1
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 5.2e-89 332.4 434 44.9
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 2.2e-87 327.0 452 40.9
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.3e-84 317.8 443 42.9
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 3.8e-84 316.2 234 68.8
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 4.2e-83 312.8 309 54.7
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 5.5e-83 312.4 214 74.8
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 8.8e-81 305.1 288 56.2
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 2.6e-80 303.5 214 70.6
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 5.7e-80 302.4 263 58.9
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 6.5e-76 288.9 420 40.2
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 6.3e-71 272.3 372 44.9
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 2.9e-60 236.9 393 39.2
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 8.0e-58 228.8 143 77.6
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 3.0e-52 210.3 251 45.4
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 4.7e-50 203.0 166 63.3
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 9.8e-48 195.3 145 66.2
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 2.2e-47 194.1 432 31.7
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 4.6e-45 186.4 125 73.6
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 4.9e-39 166.4 164 53.7
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.9e-38 164.5 206 46.1
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 1.2e-37 161.8 109 78.9
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 1.5e-32 144.8 300 32.7
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 3.4e-32 143.7 419 28.9
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.9e-31 140.6 163 47.9
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 6.6e-28 129.4 94 67.0
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 2.8e-26 124.0 87 71.3
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 6.9e-25 119.4 126 49.2
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.0e-20 105.5 65 75.4
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 1.6e-18 98.2 93 49.5
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 5.3e-17 93.2 131 42.0
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.7e-15 88.2 338 25.1
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 4.9e-15 86.7 79 54.4
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.3e-11 73.9 54 64.8
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 2.8e-10 70.9 79 51.9


User provided reference genes

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