Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.0e-38 162.9 81 100.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 4.3e-29 131.0 72 87.5
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 9.5e-29 129.8 72 90.3
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 2.8e-28 128.3 72 88.9
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 2.8e-28 128.3 72 88.9
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 4.7e-28 127.5 72 87.5
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.0e-27 126.3 72 86.1
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 2.3e-27 125.2 72 86.1
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 3.0e-27 124.8 72 87.5
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 3.0e-27 124.8 72 87.5
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 3.0e-27 124.8 72 87.5
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 7.5e-26 120.2 72 81.9
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 7.5e-26 120.2 72 81.9
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 1.7e-25 119.0 72 81.9
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 3.7e-25 117.9 72 80.6
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 4.9e-25 117.5 72 80.6
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 4.9e-25 117.5 72 80.6
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 4.9e-25 117.5 72 80.6
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 4.9e-25 117.5 72 80.6
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 4.9e-25 117.5 72 80.6
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.4e-24 115.9 72 79.2
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 2.4e-24 115.2 72 76.4
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 3.2e-24 114.8 72 79.2
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 3.2e-24 114.8 72 79.2
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.2e-24 114.8 72 76.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 3.2e-24 114.8 72 76.4
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 7.0e-24 113.6 72 76.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.0e-23 112.1 72 75.0
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 2.0e-23 112.1 72 75.0
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 4.6e-23 110.9 72 75.0
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 4.6e-23 110.9 70 77.1
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.9e-23 110.5 72 73.6
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.9e-23 110.5 72 75.0
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 5.9e-23 110.5 72 75.0
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 5.9e-23 110.5 72 75.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 7.8e-23 110.2 72 72.2
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 7.8e-23 110.2 70 75.7
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.0e-22 109.8 72 73.6
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.3e-22 109.4 72 72.2
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 1.3e-22 109.4 72 72.2
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.7e-22 109.0 72 75.0
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.7e-22 109.0 72 73.6
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.7e-22 109.0 70 77.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.7e-22 109.0 70 77.1
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 2.3e-22 108.6 72 73.6
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 2.3e-22 108.6 72 70.8
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 3.9e-22 107.8 72 70.8
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 3.9e-22 107.8 72 70.8
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.0e-22 107.5 72 69.4
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 6.6e-22 107.1 72 70.8
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 6.6e-22 107.1 72 69.4
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 8.6e-22 106.7 72 73.6
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.1e-21 106.3 72 70.8
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.5e-21 105.9 70 71.4
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.5e-21 105.9 72 69.4
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 1.9e-21 105.5 72 66.7
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.9e-21 105.5 72 69.4
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.9e-21 105.5 74 68.9
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.5e-21 105.1 72 72.2
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 2.5e-21 105.1 72 70.8
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.3e-21 104.8 72 73.6
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 4.3e-21 104.4 72 69.4
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 5.6e-21 104.0 72 68.1
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 5.6e-21 104.0 74 68.9
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 7.3e-21 103.6 72 69.4
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 7.3e-21 103.6 72 68.1
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 9.5e-21 103.2 72 66.7
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 9.5e-21 103.2 72 69.4
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 9.5e-21 103.2 72 68.1
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-20 102.8 72 75.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.2e-20 102.8 72 69.4
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.6e-20 102.4 72 66.7
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.6e-20 102.4 72 66.7
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.6e-20 102.4 72 66.7
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.6e-20 102.4 72 68.1
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 2.1e-20 102.1 72 70.8
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 3.6e-20 101.3 71 70.4
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 3.6e-20 101.3 72 68.1
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.6e-20 101.3 72 68.1
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.7e-20 100.9 72 66.7
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 4.7e-20 100.9 73 69.9
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 4.7e-20 100.9 72 68.1
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 6.2e-20 100.5 72 66.7
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 6.2e-20 100.5 72 66.7
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.0e-20 100.1 71 66.2
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 8.0e-20 100.1 67 71.6
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 8.0e-20 100.1 72 65.3
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.1e-19 99.8 72 66.7
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 1.1e-19 99.8 70 67.1
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.1e-19 99.8 70 67.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 1.4e-19 99.4 72 66.7
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.4e-19 99.4 70 67.1
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.3e-19 98.6 67 68.7
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.3e-19 98.6 67 68.7
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 2.3e-19 98.6 72 66.7
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.1e-19 98.2 71 64.8
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 3.1e-19 98.2 72 70.8
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-19 98.2 72 70.8
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-19 98.2 72 70.8
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.1e-19 98.2 72 70.8
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 3.1e-19 98.2 72 65.3
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.0e-19 97.8 70 65.7
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 4.0e-19 97.8 72 70.8
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 6.8e-19 97.1 67 71.6
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 6.8e-19 97.1 72 68.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.9e-19 96.7 72 69.4
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.5e-18 95.9 72 61.1
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.5e-18 95.9 71 67.6
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.5e-18 95.9 67 67.2
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.0e-18 95.5 72 58.3
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 3.4e-18 94.7 67 68.7
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 3.4e-18 94.7 72 62.5
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.3e-17 92.8 72 61.1
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.2e-17 92.0 70 62.9
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.2e-17 92.0 67 67.2
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 4.9e-17 90.9 70 61.4
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.4e-16 89.4 67 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 7.8e-15 83.6 67 62.7
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 2.3e-14 82.0 64 62.5
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 2.3e-14 82.0 67 56.7
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 3.9e-14 81.3 67 56.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 6.6e-14 80.5 76 55.3
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 8.6e-14 80.1 67 59.7
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.1e-13 79.7 61 63.9
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 3.3e-13 78.2 64 59.4
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-12 75.9 52 78.8
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.6e-12 75.9 70 54.3
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.8e-12 75.1 62 54.8
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 8.9e-11 70.1 67 53.7
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-10 69.7 58 62.1
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.6e-10 68.6 73 47.9
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 1.7e-09 65.9 72 45.8
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 2.2e-09 65.5 60 53.3
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 2.9e-09 65.1 73 49.3
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.7e-09 64.7 59 52.5
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 3.7e-09 64.7 58 46.6
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-08 62.8 75 49.3
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 3.9e-06 54.7 61 47.5


User provided reference genes

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