Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30273 Brassica carinata HOM05D002531 ORTHO05D027417 5.8e-37 157.1 85 100.0
BcaB03g12678 Brassica carinata HOM05D002531 ORTHO05D027417 1.5e-32 142.5 84 94.0
BcaC03g13672 Brassica carinata HOM05D002531 ORTHO05D003018 4.2e-19 97.8 55 98.2
BNapus_Darmor_BZH_scaffold_38p02500 Brassica napus HOM05D002531 ORTHO05D003018 4.2e-19 97.8 55 98.2
Sp6g25030 Schrenkiella parvula HOM05D002531 ORTHO05D003018 7.1e-19 97.1 55 96.4
A02p05520 Brassica napus HOM05D002531 ORTHO05D003018 9.3e-19 96.7 55 96.4
BraA02t05503Z Brassica rapa HOM05D002531 ORTHO05D003018 9.3e-19 96.7 55 96.4
Thhalv10015536m.g Eutrema salsugineum HOM05D002531 ORTHO05D003018 4.6e-18 94.4 55 94.5
Carub.0006s1772 Capsella rubella HOM05D002531 ORTHO05D003018 7.9e-18 93.6 55 94.5
AL6G30870 Arabidopsis lyrata HOM05D002531 ORTHO05D003018 3.9e-17 91.3 55 92.7
AT5G19380 Arabidopsis thaliana HOM05D002531 ORTHO05D003018 3.9e-17 91.3 55 92.7
CARHR193580 Cardamine hirsuta HOM05D002531 ORTHO05D003018 5.1e-17 90.9 55 92.7
Potri.009G069400 Populus trichocarpa HOM05D002531 ORTHO05D003018 4.8e-15 84.3 55 83.6
Sabra09G0052300 Salix brachista HOM05D002531 ORTHO05D003018 4.8e-15 84.3 55 83.6
ECA238G2107 Erigeron canadensis HOM05D000059 ORTHO05D000128 8.2e-15 83.6 54 83.3
Manes.02G138800 Manihot esculenta HOM05D002531 ORTHO05D003018 8.2e-15 83.6 55 81.8
SalBow6G1120 Salvia bowleyana HOM05D002531 ORTHO05D003018 8.2e-15 83.6 55 81.8
SalBow6G1800 Salvia bowleyana HOM05D002531 ORTHO05D003018 8.2e-15 83.6 55 81.8
A02p01410 Brassica napus HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
C02p05650 Brassica napus HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
BolC2t06509H Brassica oleracea HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
BraA02t05120Z Brassica rapa HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
Ciclev10017793m.g Citrus clementina HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 80.0
Gohir.A09G110501 Gossypium hirsutum HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
Gohir.D09G106920 Gossypium hirsutum HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
Gohir.D09G106980 Gossypium hirsutum HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
Gorai.006G124500 Gossypium raimondii HOM05D002531 ORTHO05D003018 1.1e-14 83.2 55 81.8
COL.COLO4_32808 Corchorus olitorius HOM05D002531 ORTHO05D003018 1.4e-14 82.8 55 80.0
HanXRQChr06g0182511 Helianthus annuus HOM05D002531 ORTHO05D003018 1.4e-14 82.8 54 83.3
TWI75G0164 Tripterygium wilfordii HOM05D002531 ORTHO05D003018 1.4e-14 82.8 55 80.0
TWI79G0380 Tripterygium wilfordii HOM05D002531 ORTHO05D003018 1.4e-14 82.8 55 80.0
AL6G22940 Arabidopsis lyrata HOM05D002531 ORTHO05D003018 1.8e-14 82.4 55 80.0
AT5G12170 Arabidopsis thaliana HOM05D002531 ORTHO05D003018 1.8e-14 82.4 55 80.0
Lsat_1_v5_gn_2_32000 Lactuca sativa HOM05D002531 ORTHO05D003018 1.8e-14 82.4 54 83.3
Glyma.07G232500 Glycine max HOM05D002531 ORTHO05D003018 2.4e-14 82.0 55 80.0
QL01p016997 Quercus lobata HOM05D002531 ORTHO05D003018 2.4e-14 82.0 55 80.0
Sp6g31470 Schrenkiella parvula HOM05D002531 ORTHO05D003018 3.1e-14 81.6 55 80.0
Duzib168G2203 Durio zibethinus HOM05D002531 ORTHO05D003018 4.1e-14 81.3 55 80.0
Lalb_Chr04g0249251 Lupinus albus HOM05D002531 ORTHO05D003018 4.1e-14 81.3 55 76.4
PGR119G2227 Punica granatum HOM05D002531 ORTHO05D003018 4.1e-14 81.3 55 80.0
Atru.chr3.2950 Acer truncatum HOM05D002531 ORTHO05D003018 5.3e-14 80.9 55 78.2
Atru.chr3.2959 Acer truncatum HOM05D002531 ORTHO05D003018 5.3e-14 80.9 55 78.2
CARHR200960 Cardamine hirsuta HOM05D002531 ORTHO05D003018 5.3e-14 80.9 55 78.2
Thhalv10015653m.g Eutrema salsugineum HOM05D002531 ORTHO05D003018 5.3e-14 80.9 55 78.2
Carub.0006s1067 Capsella rubella HOM05D002531 ORTHO05D003018 6.9e-14 80.5 55 78.2
CAN.G575.94 Capsicum annuum HOM05D002531 ORTHO05D003018 6.9e-14 80.5 55 76.4
Medtr0028s0090 Medicago truncatula HOM05D002531 ORTHO05D003018 6.9e-14 80.5 55 74.5
Psat0s976g0040 Pisum sativum HOM05D002531 ORTHO05D003018 6.9e-14 80.5 55 74.5
Gohir.A13G218500 Gossypium hirsutum HOM05D002531 ORTHO05D003018 9.0e-14 80.1 55 76.4
Gohir.D13G222200 Gossypium hirsutum HOM05D002531 ORTHO05D003018 9.0e-14 80.1 55 76.4
Gorai.013G253300 Gossypium raimondii HOM05D002531 ORTHO05D003018 9.0e-14 80.1 55 76.4
MD03G1165200 Malus domestica HOM05D002531 ORTHO05D003018 9.0e-14 80.1 55 78.2
SGA_v2.0_scaffold29G12229 Striga asiatica HOM05D002531 ORTHO05D003018 9.0e-14 80.1 55 78.2
Ca_14730_v3 Cicer arietinum L. HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 76.4
Migut.D00667 Erythranthe guttata HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 76.4
Eucgr.J00689 Eucalyptus grandis HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 78.2
MBI19_g28781_MAGBIO Magnolia biondii HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 76.4
Rhsim01G0195400 Rhododendron simsii HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 78.2
Solyc12g099810.2 Solanum lycopersicum HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 76.4
Sopen12g034440 Solanum pennellii HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 76.4
PGSC0003DMG402004716 Solanum tuberosum HOM05D002531 ORTHO05D003018 1.2e-13 79.7 55 76.4
CSS0017465 Camellia sinensis var. sinensis HOM05D002531 ORTHO05D003018 1.5e-13 79.3 55 78.2
CANSAT54G0172 Cannabis sativa HOM05D002531 ORTHO05D003018 1.5e-13 79.3 55 78.2
Oeu025909.4 Olea europaea HOM05D002531 ORTHO05D003018 1.5e-13 79.3 55 76.4
CDE05G3680 Ceratophyllum demersum HOM05D002531 ORTHO05D003018 2.0e-13 79.0 55 72.7
Glyma.20G041200 Glycine max HOM05D002531 ORTHO05D003018 2.0e-13 79.0 55 74.5
Lj6g0021604 Lotus japonicus HOM05D002531 ORTHO05D003018 2.0e-13 79.0 55 72.7
Sed0022124 Sechium edule HOM05D002531 ORTHO05D003018 2.0e-13 79.0 55 69.1
Cfa009880 Carpinus fangiana HOM05D002531 ORTHO05D003018 2.6e-13 78.6 55 78.2
ClCG02G022820 Citrullus lanatus HOM05D002531 ORTHO05D003018 2.6e-13 78.6 55 72.7
MELO3C014559.2 Cucumis melo HOM05D002531 ORTHO05D003018 2.6e-13 78.6 55 72.7
CsaV3_6G038950 Cucumis sativus L. HOM05D002531 ORTHO05D003018 2.6e-13 78.6 55 72.7
Phvul.008G201700 Phaseolus vulgaris HOM05D002531 ORTHO05D003018 2.6e-13 78.6 55 70.9
Zm00001eb362700 Zea mays HOM05D002531 ORTHO05D003018 2.6e-13 78.6 55 72.7
Aqoxy2G00393 Aquilegia oxysepala HOM05D002531 ORTHO05D003018 3.4e-13 78.2 55 72.7
Haze_23245 Corylus avellana HOM05D002531 ORTHO05D003018 3.4e-13 78.2 55 78.2
GSVIVG01037291001 Vitis vinifera HOM05D002531 ORTHO05D003018 3.4e-13 78.2 55 78.2
arahy.Tifrunner.gnm1.ann1.F3S5WR Arachis hypogaea HOM05D002531 ORTHO05D003018 4.5e-13 77.8 55 72.7
arahy.Tifrunner.gnm1.ann1.TX8F6J Arachis hypogaea HOM05D002531 ORTHO05D003018 4.5e-13 77.8 55 72.7
Ca_06198_v3 Cicer arietinum L. HOM05D002531 ORTHO05D003018 4.5e-13 77.8 55 72.7
Nitab4.5_0002310g0100 Nicotiana tabacum HOM05D002531 ORTHO05D003018 4.5e-13 77.8 55 74.5
Nitab4.5_0014713g0010 Nicotiana tabacum HOM05D002531 ORTHO05D003018 4.5e-13 77.8 55 74.5
CiPaw.14G112100 Carya illinoinensis HOM05D002531 ORTHO05D003018 5.9e-13 77.4 55 78.2
TPR.G16430 Trifolium pratense HOM05D002531 ORTHO05D003018 5.9e-13 77.4 55 70.9
TAR633G1491 Trochodendron aralioides HOM05D002531 ORTHO05D003018 5.9e-13 77.4 55 74.5
Aa31LG1G8790 Aethionema arabicum HOM05D002531 ORTHO05D003018 7.7e-13 77.0 82 61.0
Glyma.14G035600 Glycine max HOM05D002531 ORTHO05D003018 7.7e-13 77.0 55 70.9
LjContig00564g0011816 Lotus japonicus HOM05D002531 ORTHO05D003018 7.7e-13 77.0 55 72.7
TPR.G24373 Trifolium pratense HOM05D002531 ORTHO05D003018 7.7e-13 77.0 55 70.9
Lj1A278G60 Lonicera japonica HOM05D002531 ORTHO05D003018 1.3e-12 76.3 55 74.5
SEGI_24624 Sequoiadendron giganteum HOM05D002531 ORTHO05D003018 1.7e-12 75.9 55 69.1
Cc00_g10200 Coffea canephora HOM05D002531 ORTHO05D003018 2.2e-12 75.5 55 72.7
Oeu061705.1 Olea europaea HOM05D002531 ORTHO05D003018 2.2e-12 75.5 55 72.7
Aa31LG3G15100 Aethionema arabicum HOM05D002531 ORTHO05D003018 2.9e-12 75.1 55 74.5
VMungo0647G1809 Vigna mungo HOM05D002531 ORTHO05D003018 2.9e-12 75.1 55 69.1
AUR62006549 Chenopodium quinoa HOM05D002531 ORTHO05D003018 3.8e-12 74.7 55 69.1
Medtr5g089340 Medicago truncatula HOM05D002531 ORTHO05D003018 3.8e-12 74.7 55 70.9
AUR62000201 Chenopodium quinoa HOM05D002531 ORTHO05D003018 5.0e-12 74.3 55 69.1
Sc09g0001030 Simmondsia chinensis HOM05D002531 ORTHO05D003018 1.1e-11 73.2 55 70.9
EL10Ac4g10110 Beta vulgaris HOM05D002531 ORTHO05D003018 1.4e-11 72.8 55 67.3
arahy.Tifrunner.gnm1.ann1.DP8IJC Arachis hypogaea HOM05D002531 ORTHO05D003018 2.1e-10 68.9 50 74.0
arahy.Tifrunner.gnm1.ann1.RFG9X9 Arachis hypogaea HOM05D002531 ORTHO05D003018 2.1e-10 68.9 50 74.0
PSO384G4866 Papaver somniferum HOM05D002531 ORTHO05D003018 2.1e-10 68.9 55 67.3
ATR0499G012 Amborella trichopoda HOM05D002531 ORTHO05D003018 6.1e-10 67.4 55 60.0
SEGI_31873 Sequoiadendron giganteum HOM05D002531 ORTHO05D003018 7.9e-10 67.0 55 58.2
Zm00001eb140590 Zea mays HOM05D002531 ORTHO05D003018 7.9e-10 67.0 49 69.4
Mapoly0111s0037 Marchantia polymorpha HOM05D002531 ORTHO05D003018 2.3e-09 65.5 57 59.6
Cpa.g.sc157.58 Carica papaya HOM05D002531 ORTHO05D003018 3.9e-09 64.7 52 71.2
Aqoxy6G00823 Aquilegia oxysepala HOM05D002531 ORTHO05D003018 1.9e-08 62.4 51 64.7
CDE06G1098 Ceratophyllum demersum HOM05D002531 ORTHO05D003018 2.5e-08 62.0 55 61.8
Pp3c6_18950 Physcomitrium patens HOM05D002531 ORTHO05D003018 2.5e-08 62.0 55 58.2
CDE08G0219 Ceratophyllum demersum HOM05D002531 ORTHO05D003018 4.3e-08 61.2 55 60.0
Os01g0955700 Oryza sativa ssp. japonica HOM05D002531 ORTHO05D003018 4.3e-08 61.2 46 69.6
Pp3c5_8390 Physcomitrium patens HOM05D002531 ORTHO05D003018 4.3e-08 61.2 55 56.4
MBI16_g06008_MAGBIO Magnolia biondii HOM05D002531 ORTHO05D027417 5.7e-08 60.8 55 60.0
TAR628G0620 Trochodendron aralioides HOM05D002531 ORTHO05D003018 5.7e-08 60.8 55 58.2
Thecc.08G073400 Theobroma cacao HOM05D002531 ORTHO05D003018 2.8e-07 58.5 55 58.2
Ciclev10000856m.g Citrus clementina HOM05D002531 ORTHO05D003018 3.7e-07 58.2 55 60.0
Zm00001eb400930 Zea mays HOM05D002531 ORTHO05D003018 4.8e-07 57.8 55 50.9
Lj4A740T31 Lonicera japonica HOM05D002531 ORTHO05D003018 6.3e-07 57.4 45 68.9
Zm00001eb264550 Zea mays HOM05D002531 ORTHO05D003018 6.3e-07 57.4 55 49.1
Aa31LG4G9570 Aethionema arabicum HOM05D002531 ORTHO05D003018 8.2e-07 57.0 55 58.2
AT4G24460 Arabidopsis thaliana HOM05D002531 ORTHO05D003018 8.2e-07 57.0 55 56.4
Hma1.2p1_0010F.1_g006530 Hydrangea macrophylla HOM05D002531 ORTHO05D003018 8.2e-07 57.0 55 52.7
Manes.18G056700 Manihot esculenta HOM05D002531 ORTHO05D003018 8.2e-07 57.0 55 60.0
HPP92_020404 Vanilla planifolia HOM05D002531 ORTHO05D003018 8.2e-07 57.0 55 49.1
AL7G28760 Arabidopsis lyrata HOM05D002531 ORTHO05D003018 1.1e-06 56.6 55 56.4
GSVIVG01009201001 Vitis vinifera HOM05D002531 ORTHO05D003018 1.1e-06 56.6 52 59.6
Ah.16g109590 Amaranthus hybridus HOM05D002531 ORTHO05D003018 1.4e-06 56.2 61 55.7
EL10Ac1g00488 Beta vulgaris HOM05D002531 ORTHO05D003018 1.4e-06 56.2 51 60.8
CiPaw.07G163400 Carya illinoinensis HOM05D002531 ORTHO05D003018 1.8e-06 55.8 55 52.7
PSO675G8490 Papaver somniferum HOM05D002531 ORTHO05D003018 1.8e-06 55.8 55 52.7
Sp7g22440 Schrenkiella parvula HOM05D002531 ORTHO05D003018 1.8e-06 55.8 55 54.5
Atru.chr13.986 Acer truncatum HOM05D002531 ORTHO05D003018 2.4e-06 55.5 51 58.8
Gohir.D05G221300 Gossypium hirsutum HOM05D002531 ORTHO05D003018 2.4e-06 55.5 55 50.9
Gorai.009G228500 Gossypium raimondii HOM05D002531 ORTHO05D003018 2.4e-06 55.5 55 50.9
A01p15820 Brassica napus HOM05D002531 ORTHO05D003018 3.1e-06 55.1 55 52.7
C01p19770 Brassica napus HOM05D002531 ORTHO05D003018 3.1e-06 55.1 55 54.5
BolC1t01905H Brassica oleracea HOM05D002531 ORTHO05D003018 3.1e-06 55.1 55 54.5
BraA01t01517Z Brassica rapa HOM05D002531 ORTHO05D003018 3.1e-06 55.1 55 52.7
Os12g0511300 Oryza sativa ssp. japonica HOM05D002531 ORTHO05D003018 3.1e-06 55.1 55 47.3
Gohir.A05G218600 Gossypium hirsutum HOM05D002531 ORTHO05D003018 4.1e-06 54.7 55 50.9
SMO117G0306 Selaginella moellendorffii HOM05D002531 ORTHO05D003018 4.1e-06 54.7 54 53.7
BcaC09g50866 Brassica carinata HOM05D002531 ORTHO05D003018 5.3e-06 54.3 55 52.7
Actinidia19249 Actinidia chinensis HOM05D002531 ORTHO05D003018 6.9e-06 53.9 55 52.7
DCAR_012851 Daucus carota HOM05D002531 ORTHO05D003018 6.9e-06 53.9 45 62.2
THA.LOC104815468 Tarenaya hassleriana HOM05D002531 ORTHO05D003018 6.9e-06 53.9 55 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1490 Anthoceros agrestis HOM05D002531 ORTHO05D003018 9.1e-06 53.5 54 50.0
Thhalv10025263m.g Eutrema salsugineum HOM05D002531 ORTHO05D003018 9.1e-06 53.5 55 50.9
Lj1g0009324 Lotus japonicus HOM05D002531 ORTHO05D003018 9.1e-06 53.5 55 52.7
Hund26824 Selenicereus undatus HOM05D002531 ORTHO05D003018 9.1e-06 53.5 55 56.4


User provided reference genes

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