Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30246 Brassica carinata HOM05D010938 ORTHO05D012292 1.3e-70 269.6 140 100.0
BcaC03g17307 Brassica carinata HOM05D010938 ORTHO05D012292 2.2e-65 252.3 139 93.5
C02p52560 Brassica napus HOM05D010938 ORTHO05D012292 2.0e-63 245.7 133 94.7
BolC2t11331H Brassica oleracea HOM05D010938 ORTHO05D012292 4.6e-63 244.6 133 94.0
BraA02t08435Z Brassica rapa HOM05D010938 ORTHO05D012292 4.6e-63 244.6 133 94.7
A02p34200 Brassica napus HOM05D010938 ORTHO05D012292 5.6e-61 237.7 133 92.5
AL5G14590 Arabidopsis lyrata HOM05D010938 ORTHO05D012292 6.8e-51 204.1 137 75.2
AT3G25930 Arabidopsis thaliana HOM05D010938 ORTHO05D012292 2.0e-50 202.6 137 77.4
Thhalv10005072m.g Eutrema salsugineum HOM05D010938 ORTHO05D012292 4.4e-50 201.4 133 76.7
Sp2g15170 Schrenkiella parvula HOM05D010938 ORTHO05D012292 7.6e-50 200.7 137 74.5
CARHR146920 Cardamine hirsuta HOM05D010938 ORTHO05D012292 8.4e-49 197.2 134 76.1
A06p42350 Brassica napus HOM05D010938 ORTHO05D012292 2.4e-48 195.7 137 70.1
BraA06t27150Z Brassica rapa HOM05D010938 ORTHO05D012292 2.4e-48 195.7 137 70.1
BcaC06g33936 Brassica carinata HOM05D010938 ORTHO05D012292 1.2e-47 193.4 138 68.8
BolC7t44031H Brassica oleracea HOM05D010938 ORTHO05D012292 1.2e-47 193.4 137 69.3
C07p34990 Brassica napus HOM05D010938 ORTHO05D012292 1.6e-47 193.0 137 69.3
BcaC06g31102 Brassica carinata HOM05D010938 ORTHO05D012292 2.1e-44 182.6 133 68.4
Aa31LG2G6390 Aethionema arabicum HOM05D010938 ORTHO05D012292 2.6e-42 175.6 137 64.2
Carub.0005s0379 Capsella rubella HOM05D010938 ORTHO05D012292 2.6e-42 175.6 129 68.2
THA.LOC104825697 Tarenaya hassleriana HOM05D000483 ORTHO05D012292 3.2e-40 168.7 135 65.2
THA.LOC104824028 Tarenaya hassleriana HOM05D000483 ORTHO05D012292 2.0e-34 149.4 135 59.3
QL01p041005 Quercus lobata HOM05D000483 ORTHO05D000158 3.0e-22 109.0 133 39.1
Manes.14G103700 Manihot esculenta HOM05D000483 ORTHO05D012292 1.9e-21 106.3 134 41.0
MD16G1041100 Malus domestica HOM05D000483 ORTHO05D000158 3.3e-21 105.5 133 44.4
Thecc.02G226600 Theobroma cacao HOM05D000483 ORTHO05D000158 7.4e-21 104.4 136 44.1
Dinv31627 Davidia involucrata HOM05D000483 ORTHO05D000158 1.6e-20 103.2 137 43.1
Dinv21071 Davidia involucrata HOM05D000483 ORTHO05D000158 5.3e-19 98.2 129 44.2
TWI79G0807 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 5.3e-19 98.2 133 41.4
CANSAT01G3008 Cannabis sativa HOM05D000483 ORTHO05D000158 1.2e-18 97.1 126 45.2
Sabra08G0092500 Salix brachista HOM05D000483 ORTHO05D000158 1.2e-18 97.1 136 41.9
Duzib248G0562 Durio zibethinus HOM05D000483 ORTHO05D012292 2.6e-18 95.9 133 40.6
Atru.chr4.1079 Acer truncatum HOM05D000483 ORTHO05D000158 5.8e-18 94.7 133 39.8
TWI75G1531 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 1.0e-17 94.0 133 39.8
Potri.010G123300 Populus trichocarpa HOM05D000483 ORTHO05D000158 1.3e-17 93.6 125 43.2
TAR374G1235 Trochodendron aralioides HOM05D000483 ORTHO05D000158 1.3e-17 93.6 133 39.8
CiPaw.16G065800 Carya illinoinensis HOM05D000483 ORTHO05D000158 2.9e-17 92.4 136 41.9
MD13G1040200 Malus domestica HOM05D000483 ORTHO05D000158 2.9e-17 92.4 134 41.0
Prupe.1G312900 Prunus persica HOM05D000483 ORTHO05D000158 6.5e-17 91.3 133 38.3
Eucgr.B03009 Eucalyptus grandis HOM05D000483 ORTHO05D000158 8.4e-17 90.9 136 39.0
PGR102G3117 Punica granatum HOM05D000483 ORTHO05D000158 3.2e-16 89.0 139 41.0
Cfa018583 Carpinus fangiana HOM05D000483 ORTHO05D000158 4.2e-16 88.6 135 39.3
Haze_17498 Corylus avellana HOM05D000483 ORTHO05D000158 5.5e-16 88.2 135 39.3
QL01p041086 Quercus lobata HOM05D000483 ORTHO05D000158 5.5e-16 88.2 135 37.0
Rhsim09G0106700 Rhododendron simsii HOM05D000483 ORTHO05D000158 9.3e-16 87.4 131 40.5
vmacro10566 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 9.3e-16 87.4 125 36.8
Cc11_g09990 Coffea canephora HOM05D000483 ORTHO05D000158 1.6e-15 86.7 137 38.7
CDE08G1069 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 2.1e-15 86.3 134 40.3
Sed0025113 Sechium edule HOM05D000483 ORTHO05D000158 2.1e-15 86.3 141 39.0
CDE09G0523 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 4.6e-15 85.1 124 39.5
Eucgr.B03010 Eucalyptus grandis HOM05D000483 ORTHO05D000158 7.9e-15 84.3 133 33.8
Manes.14G103600 Manihot esculenta HOM05D000483 ORTHO05D000158 1.3e-14 83.6 136 35.3
ClCG05G022610 Citrullus lanatus HOM05D000483 ORTHO05D000158 2.3e-14 82.8 134 38.8
CsaV3_5G034430 Cucumis sativus L. HOM05D000483 ORTHO05D000158 2.3e-14 82.8 133 39.1
Eucgr.G02310 Eucalyptus grandis HOM05D000483 ORTHO05D000158 3.0e-14 82.4 126 34.9
Potri.013G112300 Populus trichocarpa HOM05D000483 ORTHO05D000158 3.0e-14 82.4 135 40.0
Sabra10G0093400 Salix brachista HOM05D000483 ORTHO05D000158 3.0e-14 82.4 136 39.7
MBI16_g34838_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 3.9e-14 82.0 134 37.3
Nn4g23880 Nelumbo nucifera HOM05D000483 ORTHO05D000158 6.7e-14 81.3 132 40.2
Potri.010G123400 Populus trichocarpa HOM05D000483 ORTHO05D000158 1.5e-13 80.1 137 38.0
TAR622G0685 Trochodendron aralioides HOM05D000483 ORTHO05D000158 1.5e-13 80.1 121 38.0
Eucgr.B03008 Eucalyptus grandis HOM05D000483 ORTHO05D000158 1.9e-13 79.7 133 36.1
TAR622G0258 Trochodendron aralioides HOM05D000483 ORTHO05D000158 1.9e-13 79.7 137 38.0
unitig_8.g3436 Utricularia gibba HOM05D000483 ORTHO05D000158 1.9e-13 79.7 153 34.6
MSTRG.7660 Avicennia marina HOM05D000483 ORTHO05D000158 3.3e-13 79.0 133 36.1
MELO3C012258.2 Cucumis melo HOM05D000483 ORTHO05D000158 3.3e-13 79.0 133 37.6
Nn3g17874 Nelumbo nucifera HOM05D000483 ORTHO05D000158 3.3e-13 79.0 123 35.8
Sabra13G0095400 Salix brachista HOM05D000483 ORTHO05D000158 3.3e-13 79.0 127 38.6
Thecc.02G226500 Theobroma cacao HOM05D000483 ORTHO05D000158 3.3e-13 79.0 133 37.6
Duzib248G1407 Durio zibethinus HOM05D000483 ORTHO05D000158 4.3e-13 78.6 134 37.3
SalBow8G4957 Salvia bowleyana HOM05D000483 ORTHO05D000158 4.3e-13 78.6 133 38.3
Nn3g17872 Nelumbo nucifera HOM05D000483 ORTHO05D000158 7.4e-13 77.8 123 35.8
RcHm_v2.0_Chr4g0434971 Rosa chinensis HOM05D000483 ORTHO05D000158 9.6e-13 77.4 137 35.0
PGR102G1756 Punica granatum HOM05D000483 ORTHO05D000158 1.3e-12 77.0 133 35.3
RcHm_v2.0_Chr4g0434961 Rosa chinensis HOM05D000483 ORTHO05D000158 1.3e-12 77.0 124 38.7
ECA234G1173 Erigeron canadensis HOM05D000483 ORTHO05D000158 1.6e-12 76.6 133 39.1
Dinv21070 Davidia involucrata HOM05D000483 ORTHO05D000158 2.1e-12 76.3 134 36.6
Sabra10G0093300 Salix brachista HOM05D000483 ORTHO05D000158 2.1e-12 76.3 123 37.4
Peaxi162Scf00596g00410 Petunia axillaris HOM05D000483 ORTHO05D000158 2.8e-12 75.9 135 35.6
Prupe.1G313000 Prunus persica HOM05D000483 ORTHO05D000158 2.8e-12 75.9 133 34.6
Cfa015870 Carpinus fangiana HOM05D000483 ORTHO05D000158 3.7e-12 75.5 133 36.1
FAN22G1787 Fragaria x ananassa HOM05D000483 ORTHO05D000158 3.7e-12 75.5 137 33.6
Gohir.A04G097900 Gossypium hirsutum HOM05D000483 ORTHO05D000158 3.7e-12 75.5 123 39.8
Gohir.D04G137700 Gossypium hirsutum HOM05D000483 ORTHO05D000158 3.7e-12 75.5 123 39.0
Gorai.012G122100 Gossypium raimondii HOM05D000483 ORTHO05D000158 3.7e-12 75.5 123 39.0
HanXRQChr17g0567571 Helianthus annuus HOM05D000483 ORTHO05D000158 3.7e-12 75.5 133 33.8
CiPaw.05G239100 Carya illinoinensis HOM05D000483 ORTHO05D000158 6.3e-12 74.7 134 38.1
FvH4_4g27180 Fragaria vesca HOM05D000483 ORTHO05D000158 1.4e-11 73.6 137 32.8
Lj3A1013T43 Lonicera japonica HOM05D000483 ORTHO05D000158 1.4e-11 73.6 133 36.1
Potri.010G123200 Populus trichocarpa HOM05D000483 ORTHO05D000158 1.8e-11 73.2 123 36.6
CiPaw.15G086900 Carya illinoinensis HOM05D000483 ORTHO05D000158 2.4e-11 72.8 127 33.9
SGA_v2.0_scaffold38G14944 Striga asiatica HOM05D000483 ORTHO05D000158 3.1e-11 72.4 133 33.8
Hma1.2p1_0061F.1_g033720 Hydrangea macrophylla HOM05D000483 ORTHO05D000158 4.1e-11 72.0 133 36.1
Peaxi162Scf00753g00437 Petunia axillaris HOM05D000483 ORTHO05D000158 4.1e-11 72.0 133 34.6
unitig_22.g6868 Utricularia gibba HOM05D000483 ORTHO05D000158 4.1e-11 72.0 133 34.6
Nitab4.5_0021859g0010 Nicotiana tabacum HOM05D000483 ORTHO05D000158 5.3e-11 71.6 133 33.1
GSVIVG01011879001 Vitis vinifera HOM05D000483 ORTHO05D000158 5.3e-11 71.6 123 35.8
Cpa.g.sc65.41 Carica papaya HOM05D000483 ORTHO05D000158 6.9e-11 71.2 123 39.0
Aqoxy3G00269 Aquilegia oxysepala HOM05D000483 ORTHO05D000158 9.0e-11 70.9 133 33.8
COL.COLO4_05075 Corchorus olitorius HOM05D000483 ORTHO05D000158 9.0e-11 70.9 135 36.3
MD13G1040100 Malus domestica HOM05D000483 ORTHO05D000158 9.0e-11 70.9 133 32.3
GSVIVG01011877001 Vitis vinifera HOM05D000483 ORTHO05D000158 9.0e-11 70.9 123 35.8
Cc11_g09970 Coffea canephora HOM05D000483 ORTHO05D000158 1.2e-10 70.5 133 34.6
FAN22G0552 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.2e-10 70.5 123 35.8
Migut.L01054 Erythranthe guttata HOM05D000483 ORTHO05D000158 1.5e-10 70.1 133 36.1
Oeu034230.1 Olea europaea HOM05D000483 ORTHO05D000158 1.5e-10 70.1 133 33.1
CSS0022693 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 2.6e-10 69.3 133 34.6
Ciclev10017054m.g Citrus clementina HOM05D000483 ORTHO05D000158 3.4e-10 68.9 133 34.6
Manes.14G103900 Manihot esculenta HOM05D000483 ORTHO05D000158 4.5e-10 68.6 133 30.8
Potri.008G121900 Populus trichocarpa HOM05D000483 ORTHO05D000158 4.5e-10 68.6 123 34.1
CSS0022655 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 7.6e-10 67.8 133 34.6
Nitab4.5_0003715g0060 Nicotiana tabacum HOM05D000483 ORTHO05D000158 7.6e-10 67.8 133 31.6
PGR102G2214 Punica granatum HOM05D000483 ORTHO05D000158 7.6e-10 67.8 133 30.1
CANSAT01G0015 Cannabis sativa HOM05D000483 ORTHO05D000158 1.0e-09 67.4 133 33.1
FAN12G2162 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.3e-09 67.0 123 34.1
MSTRG.7659 Avicennia marina HOM05D000483 ORTHO05D000158 1.7e-09 66.6 133 34.6
FAN12G2806 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.7e-09 66.6 144 31.2
CAN.G610.68 Capsicum annuum HOM05D000483 ORTHO05D000158 2.2e-09 66.2 136 30.1
CAN.G610.71 Capsicum annuum HOM05D000483 ORTHO05D000158 2.9e-09 65.9 133 30.8
Nn3g17876 Nelumbo nucifera HOM05D000483 ORTHO05D000158 6.5e-09 64.7 133 32.3
Actinidia13657 Actinidia chinensis HOM05D000483 ORTHO05D000158 8.5e-09 64.3 134 32.1
TAR374G0636 Trochodendron aralioides HOM05D000483 ORTHO05D000158 8.5e-09 64.3 134 31.3
Rhsim03G0142300 Rhododendron simsii HOM05D000483 ORTHO05D000158 1.4e-08 63.5 86 36.0
Actinidia38373 Actinidia chinensis HOM05D000483 ORTHO05D000158 1.9e-08 63.2 134 34.3
Sabra08G0092600 Salix brachista HOM05D000483 ORTHO05D000158 2.5e-08 62.8 123 35.0
Atru.chr11.131 Acer truncatum HOM05D000483 ORTHO05D000158 3.2e-08 62.4 133 32.3
FAN17G2137 Fragaria x ananassa HOM05D000483 ORTHO05D000158 4.2e-08 62.0 97 39.2
Os01g0511100 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 4.2e-08 62.0 123 30.9
Sc04g0006260 Simmondsia chinensis HOM05D000483 ORTHO05D000158 7.2e-08 61.2 123 35.8
Hund25057 Selenicereus undatus HOM05D000483 ORTHO05D000158 9.3e-08 60.8 125 32.8
Zm00001eb157170 Zea mays HOM05D000483 ORTHO05D000158 1.6e-07 60.1 134 26.9
Nn3g17870 Nelumbo nucifera HOM05D000483 ORTHO05D000158 2.1e-07 59.7 71 43.7
QL01p040953 Quercus lobata HOM05D000483 ORTHO05D000158 4.6e-07 58.5 95 42.1
TWI31G0357 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 4.6e-07 58.5 124 33.9
HanXRQChr16g0529441 Helianthus annuus HOM05D000483 ORTHO05D000158 6.1e-07 58.2 123 31.7
Lsat_1_v5_gn_4_15860 Lactuca sativa HOM05D000483 ORTHO05D000158 6.1e-07 58.2 134 32.1
ECA234G2718 Erigeron canadensis HOM05D000483 ORTHO05D000158 1.0e-06 57.4 134 29.9
CSS0036608 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 1.8e-06 56.6 71 38.0
HanXRQChr16g0529451 Helianthus annuus HOM05D000483 ORTHO05D000158 1.8e-06 56.6 123 30.9
Actinidia14902 Actinidia chinensis HOM05D000483 ORTHO05D000158 2.3e-06 56.2 58 44.8
CSS0038058 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 5.1e-06 55.1 63 44.4
Rhsim12G0085300 Rhododendron simsii HOM05D000483 ORTHO05D000158 5.1e-06 55.1 129 33.3
vmacro01389 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 5.1e-06 55.1 94 41.5
C06p41700 Brassica napus HOM05D000483 ORTHO05D000158 6.7e-06 54.7 134 29.1
GSVIVG01011881001 Vitis vinifera HOM05D000483 ORTHO05D000158 8.7e-06 54.3 78 34.6


User provided reference genes

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