Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30144 Brassica carinata HOM05D000119 ORTHO05D090851 1.8e-37 158.7 78 100.0
Glyma.16G072700 Glycine max HOM05D000119 ORTHO05D000054 1.4e-08 62.8 60 58.3
BcaB07g30143 Brassica carinata HOM05D000119 ORTHO05D000054 8.9e-08 60.1 28 100.0
BcaC03g17485 Brassica carinata HOM05D000119 ORTHO05D000054 8.9e-08 60.1 28 100.0
C02p54470 Brassica napus HOM05D000119 ORTHO05D000054 8.9e-08 60.1 28 100.0
BolC2t11509H Brassica oleracea HOM05D000119 ORTHO05D000054 8.9e-08 60.1 28 100.0
Thhalv10005564m.g Eutrema salsugineum HOM05D000119 ORTHO05D000054 8.9e-08 60.1 28 100.0
Carub.0005s0632 Capsella rubella HOM05D000119 ORTHO05D000054 2.6e-07 58.5 28 96.4
Glyma.19G062000 Glycine max HOM05D000119 ORTHO05D000054 3.4e-07 58.2 59 57.6
Medtr7g450950 Medicago truncatula HOM05D000119 ORTHO05D000054 3.4e-07 58.2 54 53.7
Aa31LG2G4920 Aethionema arabicum HOM05D000119 ORTHO05D000054 4.4e-07 57.8 28 92.9
A02p35640 Brassica napus HOM05D000119 ORTHO05D000054 4.4e-07 57.8 28 96.4
BraA02t08566Z Brassica rapa HOM05D000119 ORTHO05D000054 4.4e-07 57.8 28 96.4
ClCG09G019110 Citrullus lanatus HOM05D000119 ORTHO05D000054 4.4e-07 57.8 28 92.9
CsaV3_5G027280 Cucumis sativus L. HOM05D000119 ORTHO05D000054 4.4e-07 57.8 28 92.9
Sp2g16860 Schrenkiella parvula HOM05D000119 ORTHO05D000054 4.4e-07 57.8 28 96.4
Dinv33471 Davidia involucrata HOM05D003318 ORTHO05D004544 7.5e-07 57.0 28 92.9
Manes.15G149100 Manihot esculenta HOM05D000119 ORTHO05D000054 7.5e-07 57.0 54 61.1
Sed0006662 Sechium edule HOM05D000119 ORTHO05D000054 7.5e-07 57.0 33 84.8
QL02p075663 Quercus lobata HOM05D000119 ORTHO05D000054 9.8e-07 56.6 28 89.3
QL02p075747 Quercus lobata HOM05D000119 ORTHO05D000054 9.8e-07 56.6 28 89.3
Thecc.04G012600 Theobroma cacao HOM05D000119 ORTHO05D000054 1.3e-06 56.2 54 59.3
CiPaw.04G026500 Carya illinoinensis HOM05D000119 ORTHO05D000054 1.7e-06 55.8 56 53.6
Aa31LG6G1480 Aethionema arabicum HOM05D000119 ORTHO05D000054 2.2e-06 55.5 33 78.8
ATR1091G030 Amborella trichopoda HOM05D000119 ORTHO05D000054 2.2e-06 55.5 71 45.1
AT3G27785 Arabidopsis thaliana HOM05D000119 ORTHO05D000054 2.2e-06 55.5 28 92.9
Cc04_g14230 Coffea canephora HOM05D000119 ORTHO05D000054 2.2e-06 55.5 28 89.3
Phvul.008G156100 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 2.2e-06 55.5 33 75.8
Sed0011953 Sechium edule HOM05D000119 ORTHO05D000054 2.2e-06 55.5 28 89.3
SGA_v2.0_scaffold135G34894 Striga asiatica HOM05D000119 ORTHO05D000054 2.2e-06 55.5 33 75.8
arahy.Tifrunner.gnm1.ann1.BMWK0P Arachis hypogaea HOM05D000119 ORTHO05D000054 2.9e-06 55.1 29 75.9
arahy.Tifrunner.gnm1.ann1.L2YT9C Arachis hypogaea HOM05D000119 ORTHO05D000054 2.9e-06 55.1 29 75.9
CARHR149220 Cardamine hirsuta HOM05D000119 ORTHO05D000054 2.9e-06 55.1 28 85.7
Duzib187G0299 Durio zibethinus HOM05D000119 ORTHO05D000054 2.9e-06 55.1 54 57.4
Lj5A125G63 Lonicera japonica HOM05D000119 ORTHO05D000054 2.9e-06 55.1 28 85.7
Lj1g0004275 Lotus japonicus HOM05D000119 ORTHO05D000054 2.9e-06 55.1 28 82.1
Sc04g0001770 Simmondsia chinensis HOM05D000119 ORTHO05D000054 2.9e-06 55.1 60 53.3
BcaC06g30962 Brassica carinata HOM05D000119 ORTHO05D000054 3.7e-06 54.7 28 89.3
A06p40930 Brassica napus HOM05D000119 ORTHO05D000054 3.7e-06 54.7 28 85.7
BraA06t27014Z Brassica rapa HOM05D000119 ORTHO05D000054 3.7e-06 54.7 28 85.7
CAN.G1680.1 Capsicum annuum HOM05D000119 ORTHO05D000054 3.7e-06 54.7 28 85.7
MD09G1029700 Malus domestica HOM05D000119 ORTHO05D000054 3.7e-06 54.7 33 78.8
Actinidia23894 Actinidia chinensis HOM05D000119 ORTHO05D000054 4.9e-06 54.3 56 48.2
AL5G17220 Arabidopsis lyrata HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 89.3
AL7G35480 Arabidopsis lyrata HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
AT4G18770 Arabidopsis thaliana HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
BcaC06g33787 Brassica carinata HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 89.3
BcaC09g51474 Brassica carinata HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
BcaNung05915 Brassica carinata HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
A01p10780 Brassica napus HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
A03p51510 Brassica napus HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 72.7
C01p12750 Brassica napus HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
C07p36900 Brassica napus HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 89.3
BolC1t01252H Brassica oleracea HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
BraA01t01024Z Brassica rapa HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
BraA03t14234Z Brassica rapa HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 72.7
Carub.0007s2247 Capsella rubella HOM05D000119 ORTHO05D000054 4.9e-06 54.3 33 75.8
CiPaw.03G040600 Carya illinoinensis HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 85.7
ClCG06G017050 Citrullus lanatus HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 82.1
MELO3C017090.2 Cucumis melo HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 82.1
CsaV3_1G001460 Cucumis sativus L. HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 82.1
Potri.005G118500 Populus trichocarpa HOM05D000119 ORTHO05D000054 4.9e-06 54.3 54 53.7
Prupe.3G287700 Prunus persica HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 82.1
Sabra05G0097500 Salix brachista HOM05D000119 ORTHO05D000054 4.9e-06 54.3 54 53.7
Sed0000510 Sechium edule HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 82.1
SGA_v2.0_scaffold25G10833 Striga asiatica HOM05D001126 ORTHO05D000991 4.9e-06 54.3 30 73.3
THA.LOC104805385 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 4.9e-06 54.3 28 85.7
Ah.14g084340 Amaranthus hybridus HOM05D000119 ORTHO05D000054 6.4e-06 53.9 28 85.7
EL10Ac5g10736 Beta vulgaris HOM05D000119 ORTHO05D000054 6.4e-06 53.9 28 85.7
FvH4_6g51000 Fragaria vesca HOM05D000119 ORTHO05D000054 6.4e-06 53.9 33 75.8
FAN02G2054 Fragaria x ananassa HOM05D000119 ORTHO05D000054 6.4e-06 53.9 33 75.8
FAN05G2909 Fragaria x ananassa HOM05D000119 ORTHO05D000054 6.4e-06 53.9 33 75.8
FAN09G4700 Fragaria x ananassa HOM05D000119 ORTHO05D000054 6.4e-06 53.9 33 75.8
FAN14G0025 Fragaria x ananassa HOM05D000119 ORTHO05D000054 6.4e-06 53.9 33 75.8
Nitab4.5_0000003g0660 Nicotiana tabacum HOM05D000119 ORTHO05D000054 6.4e-06 53.9 28 82.1
SalBow1G4546 Salvia bowleyana HOM05D000119 ORTHO05D000054 6.4e-06 53.9 33 75.8
Sed0020734 Sechium edule HOM05D000119 ORTHO05D000054 6.4e-06 53.9 28 82.1
unitig_26.g8804 Utricularia gibba HOM05D000119 ORTHO05D000054 6.4e-06 53.9 28 82.1
Dinv20643 Davidia involucrata HOM05D000119 ORTHO05D000054 8.3e-06 53.5 62 53.2
Dinv35086 Davidia involucrata HOM05D000119 ORTHO05D000054 8.3e-06 53.5 28 82.1
Migut.O00093 Erythranthe guttata HOM05D000119 ORTHO05D000054 8.3e-06 53.5 33 75.8
FvH4_3g38310 Fragaria vesca HOM05D000119 ORTHO05D000054 8.3e-06 53.5 69 46.4
FAN11G2654 Fragaria x ananassa HOM05D000119 ORTHO05D000054 8.3e-06 53.5 69 46.4
FAN16G3318 Fragaria x ananassa HOM05D000119 ORTHO05D000054 8.3e-06 53.5 67 47.8
Psat0ss3962g0320 Pisum sativum HOM05D000462 ORTHO05D002607 8.3e-06 53.5 28 85.7


User provided reference genes

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