Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30130 Brassica carinata HOM05D007804 ORTHO05D009828 1.0e-111 406.8 209 100.0
C02p54770 Brassica napus HOM05D007804 ORTHO05D009828 4.1e-92 341.7 213 87.3
BcaC03g17515 Brassica carinata HOM05D007804 ORTHO05D009828 1.2e-91 340.1 213 86.9
BolC2t11538H Brassica oleracea HOM05D007804 ORTHO05D009828 4.5e-91 338.2 211 86.7
A06p40550 Brassica napus HOM05D007804 ORTHO05D009828 2.7e-83 312.4 216 79.6
BraA06t26974Z Brassica rapa HOM05D007804 ORTHO05D009828 2.7e-83 312.4 216 79.6
Sp2g17190 Schrenkiella parvula HOM05D007804 ORTHO05D009828 1.5e-81 306.6 218 77.5
CARHR292560 Cardamine hirsuta HOM05D007804 ORTHO05D009828 1.9e-81 306.2 220 77.7
Thhalv10004896m.g Eutrema salsugineum HOM05D007804 ORTHO05D009828 3.3e-81 305.4 221 76.5
AT3G28420 Arabidopsis thaliana HOM05D007804 ORTHO05D009828 1.2e-80 303.5 218 78.9
AL5G18030 Arabidopsis lyrata HOM05D007804 ORTHO05D009828 5.2e-79 298.1 220 78.2
A02p35930 Brassica napus HOM05D007804 ORTHO05D009828 4.4e-78 295.0 213 78.4
BraA02t08592Z Brassica rapa HOM05D007804 ORTHO05D009828 6.3e-77 291.2 213 77.9
C07p37470 Brassica napus HOM05D000068 ORTHO05D009828 3.5e-75 285.4 202 77.2
BolC7t44259H Brassica oleracea HOM05D000068 ORTHO05D009828 7.8e-75 284.3 202 76.7
BcaC06g30917 Brassica carinata HOM05D007804 ORTHO05D009828 2.3e-74 282.7 201 76.6
Carub.0005s0691 Capsella rubella HOM05D007804 ORTHO05D009828 4.9e-69 265.0 203 76.8
BcaC06g33740 Brassica carinata HOM05D007804 ORTHO05D009828 1.4e-68 263.5 203 73.9
Aa31LG2G4650 Aethionema arabicum HOM05D007804 ORTHO05D009828 2.5e-57 226.1 235 60.0
THA.LOC104805425 Tarenaya hassleriana HOM05D007804 ORTHO05D009828 1.2e-46 190.7 254 52.0
Duzib147G0590 Durio zibethinus HOM05D007804 ORTHO05D009828 2.0e-22 110.2 217 37.8
Gorai.006G026600 Gossypium raimondii HOM05D007804 ORTHO05D009828 6.2e-16 88.6 175 37.7
Gohir.D09G022600 Gossypium hirsutum HOM05D007804 ORTHO05D009828 8.2e-16 88.2 186 36.0
Gohir.A09G023300 Gossypium hirsutum HOM05D007804 ORTHO05D009828 3.1e-15 86.3 184 35.9
Thecc.04G069800 Theobroma cacao HOM05D007804 ORTHO05D009828 6.9e-15 85.1 200 35.0
COL.COLO4_36996 Corchorus olitorius HOM05D007804 ORTHO05D009828 1.2e-14 84.3 199 32.7
QL02p079311 Quercus lobata HOM05D007804 ORTHO05D009828 3.4e-14 82.8 178 38.2
Glyma.13G067400 Glycine max HOM05D007804 ORTHO05D009828 5.8e-14 82.0 186 34.9
Ciclev10012771m.g Citrus clementina HOM05D007804 ORTHO05D009828 1.7e-13 80.5 196 35.2
Lalb_Chr21g0319161 Lupinus albus HOM05D007804 ORTHO05D009828 1.7e-13 80.5 192 37.5
VMungo0464G0276 Vigna mungo HOM05D007804 ORTHO05D009828 2.9e-13 79.7 191 35.6
Cfa007487 Carpinus fangiana HOM05D007804 ORTHO05D009828 6.5e-13 78.6 175 37.1
Glyma.19G017000 Glycine max HOM05D007804 ORTHO05D009828 6.5e-13 78.6 196 34.2
Phvul.004G023300 Phaseolus vulgaris HOM05D007804 ORTHO05D009828 1.9e-12 77.0 193 34.7
Prupe.3G275600 Prunus persica HOM05D007804 ORTHO05D009828 3.2e-12 76.3 185 36.8
Manes.15G177500 Manihot esculenta HOM05D007804 ORTHO05D009828 7.1e-12 75.1 192 32.8
Manes.17G117500 Manihot esculenta HOM05D007804 ORTHO05D009828 7.1e-12 75.1 160 36.2
Manes.17G120501 Manihot esculenta HOM05D007804 ORTHO05D009828 2.1e-11 73.6 183 38.3
CiPaw.03G032600 Carya illinoinensis HOM05D007804 ORTHO05D009828 2.7e-11 73.2 186 33.9
Cpa.g.sc14.66 Carica papaya HOM05D007804 ORTHO05D009828 7.9e-11 71.6 196 36.2
RcHm_v2.0_Chr2g0169751 Rosa chinensis HOM05D007804 ORTHO05D009828 1.3e-10 70.9 184 37.0
FvH4_6g49720 Fragaria vesca HOM05D007804 ORTHO05D009828 1.8e-10 70.5 178 37.1
FAN14G3729 Fragaria x ananassa HOM05D007804 ORTHO05D009828 1.8e-10 70.5 178 37.1
FAN05G0497 Fragaria x ananassa HOM05D007804 ORTHO05D009828 2.3e-10 70.1 183 36.6
Nitab4.5_0002265g0080 Nicotiana tabacum HOM05D007804 ORTHO05D009828 2.3e-10 70.1 173 35.3
FAN09G3343 Fragaria x ananassa HOM05D007804 ORTHO05D009828 3.0e-10 69.7 179 36.3
Lj2g0027470 Lotus japonicus HOM05D007804 ORTHO05D009828 3.0e-10 69.7 193 34.7
Nn3g17058 Nelumbo nucifera HOM05D007804 ORTHO05D009828 3.0e-10 69.7 179 36.3
Nitab4.5_0001239g0070 Nicotiana tabacum HOM05D007804 ORTHO05D009828 3.0e-10 69.7 177 35.0
Lalb_Chr02g0159931 Lupinus albus HOM05D007804 ORTHO05D009828 3.9e-10 69.3 193 32.6
Sopen02g032190 Solanum pennellii HOM05D007804 ORTHO05D009828 3.9e-10 69.3 172 33.1
FAN02G3435 Fragaria x ananassa HOM05D007804 ORTHO05D009828 8.7e-10 68.2 183 35.5
Migut.K01348 Erythranthe guttata HOM05D007804 ORTHO05D009828 1.1e-09 67.8 158 36.7
Medtr6g009320 Medicago truncatula HOM05D007804 ORTHO05D009828 1.5e-09 67.4 188 32.4
Nn4g22964 Nelumbo nucifera HOM05D007804 ORTHO05D009828 1.5e-09 67.4 185 34.6
Solyc02g087440.4 Solanum lycopersicum HOM05D007804 ORTHO05D009828 1.5e-09 67.4 171 31.0
CsaV3_5G037680 Cucumis sativus L. HOM05D007804 ORTHO05D009828 3.3e-09 66.2 191 30.4
PGSC0003DMG402001401 Solanum tuberosum HOM05D007804 ORTHO05D009828 3.3e-09 66.2 179 32.4
TAR622G0153 Trochodendron aralioides HOM05D007804 ORTHO05D009828 3.3e-09 66.2 182 33.5
TPR.G32605 Trifolium pratense HOM05D007804 ORTHO05D009828 7.4e-09 65.1 188 30.3
Peaxi162Scf00129g00628 Petunia axillaris HOM05D007804 ORTHO05D009828 9.7e-09 64.7 173 33.5
Psat1g077320 Pisum sativum HOM05D007804 ORTHO05D009828 1.6e-08 63.9 177 32.8
Sed0004613 Sechium edule HOM05D007804 ORTHO05D009828 3.7e-08 62.8 172 29.1
Sed0005835 Sechium edule HOM05D007804 ORTHO05D009828 3.7e-08 62.8 172 29.1
TWI36G0430 Tripterygium wilfordii HOM05D007804 ORTHO05D009828 3.7e-08 62.8 200 32.0
CAN.G206.83 Capsicum annuum HOM05D007804 ORTHO05D009828 6.3e-08 62.0 172 31.4
ClCG09G018550 Citrullus lanatus HOM05D007804 ORTHO05D009828 1.8e-07 60.5 186 31.7
MELO3C021487.2 Cucumis melo HOM05D007804 ORTHO05D009828 1.8e-07 60.5 194 31.4
Sed0002452 Sechium edule HOM05D007804 ORTHO05D009828 9.0e-07 58.2 186 32.3
Atru.chr8.2473 Acer truncatum HOM05D007804 ORTHO05D009828 1.5e-06 57.4 172 33.1
DCAR_011178 Daucus carota HOM05D007804 ORTHO05D009828 1.0e-05 54.7 201 28.9


User provided reference genes

Program Settings