Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30104 Brassica carinata HOM05D000553 ORTHO05D020064 1.0e-57 226.9 148 100.0
A02p36220 Brassica napus HOM05D000553 ORTHO05D020064 3.3e-43 178.7 148 62.8
BraA02t08622Z Brassica rapa HOM05D000553 ORTHO05D020064 3.3e-43 178.7 148 62.8
C02p55200 Brassica napus HOM05D000553 ORTHO05D020064 1.6e-42 176.4 148 62.2
BolC2t11568H Brassica oleracea HOM05D002985 ORTHO05D003335 2.2e-39 166.0 133 63.9
C02p55190 Brassica napus HOM05D000553 ORTHO05D020064 7.3e-27 124.4 148 48.6
BraA02t08620Z Brassica rapa HOM05D000553 ORTHO05D020064 2.1e-26 122.9 148 45.9
BraA02t08621Z Brassica rapa HOM05D000553 ORTHO05D020064 1.5e-24 116.7 148 46.6
BraA02t08617Z Brassica rapa HOM05D000553 ORTHO05D021723 4.6e-21 105.1 147 44.9
BcaC03g17539 Brassica carinata HOM05D000114 ORTHO05D021723 6.0e-21 104.8 147 44.9
C02p55160 Brassica napus HOM05D000114 ORTHO05D021723 6.0e-21 104.8 147 44.9
BcaC03g17541 Brassica carinata HOM05D000425 ORTHO05D000373 1.7e-20 103.2 79 68.4
BcaB07g30105 Brassica carinata HOM05D000553 ORTHO05D021723 7.5e-16 87.8 82 51.2
BolC2t11565H Brassica oleracea HOM05D000553 ORTHO05D021723 1.1e-09 67.4 113 38.9
Ah.16g103430 Amaranthus hybridus HOM05D000553 ORTHO05D000460 8.9e-09 64.3 93 35.5
EL10Ac2g04816 Beta vulgaris HOM05D000553 ORTHO05D000460 1.2e-08 63.9 93 36.6
A02p36210 Brassica napus HOM05D007244 ORTHO05D042440 1.2e-08 63.9 36 72.2
PGR044G0199 Punica granatum HOM05D000553 ORTHO05D000460 2.0e-08 63.2 93 34.4
CAN.G154.12 Capsicum annuum HOM05D000553 ORTHO05D000460 2.6e-08 62.8 85 40.0
THA.LOC104816207 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 2.6e-08 62.8 85 40.0
arahy.Tifrunner.gnm1.ann1.K8NNXW Arachis hypogaea HOM05D000553 ORTHO05D000460 3.4e-08 62.4 93 37.6
Potri.008G067100 Populus trichocarpa HOM05D000553 ORTHO05D000460 3.4e-08 62.4 93 35.5
Atru.chr8.2225 Acer truncatum HOM05D000553 ORTHO05D000460 4.4e-08 62.0 93 38.7
Phvul.008G224700 Phaseolus vulgaris HOM05D000553 ORTHO05D000460 4.4e-08 62.0 93 36.6
VMungo0647G1232 Vigna mungo HOM05D000553 ORTHO05D000460 4.4e-08 62.0 93 36.6
AUR62033411 Chenopodium quinoa HOM05D000553 ORTHO05D000460 5.8e-08 61.6 85 37.6
Gohir.D09G160200 Gossypium hirsutum HOM05D000553 ORTHO05D000460 5.8e-08 61.6 93 37.6
Gorai.006G181800 Gossypium raimondii HOM05D000553 ORTHO05D000460 5.8e-08 61.6 93 37.6
Lalb_Chr10g0105121 Lupinus albus HOM05D000553 ORTHO05D000460 5.8e-08 61.6 93 34.4
TWI74G0106 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 5.8e-08 61.6 85 37.6
CANSAT56G1463 Cannabis sativa HOM05D000553 ORTHO05D000460 7.6e-08 61.2 93 35.5
CANSAT56G3951 Cannabis sativa HOM05D000553 ORTHO05D000460 7.6e-08 61.2 93 35.5
Glyma.14G060000 Glycine max HOM05D000553 ORTHO05D000460 7.6e-08 61.2 93 36.6
LjContig00357g0010180 Lotus japonicus HOM05D000553 ORTHO05D000460 7.6e-08 61.2 93 35.5
THA.LOC104810094 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 7.6e-08 61.2 93 36.6
THA.LOC104810097 Tarenaya hassleriana HOM05D000553 ORTHO05D000460 7.6e-08 61.2 93 36.6
TAR633G2493 Trochodendron aralioides HOM05D000553 ORTHO05D000460 7.6e-08 61.2 93 35.5
arahy.Tifrunner.gnm1.ann1.5I106H Arachis hypogaea HOM05D000553 ORTHO05D000460 9.9e-08 60.8 93 35.5
arahy.Tifrunner.gnm1.ann1.7A6EAY Arachis hypogaea HOM05D000553 ORTHO05D000460 9.9e-08 60.8 93 35.5
Rhsim03G0142200 Rhododendron simsii HOM05D000553 ORTHO05D000460 9.9e-08 60.8 93 36.6
Duzib114G0020 Durio zibethinus HOM05D000553 ORTHO05D000460 1.3e-07 60.5 93 35.5
RcHm_v2.0_Chr1g0370001 Rosa chinensis HOM05D000553 ORTHO05D000460 1.3e-07 60.5 93 34.4
Hund13849 Selenicereus undatus HOM05D000553 ORTHO05D000460 1.3e-07 60.5 93 35.5
CARHR083330 Cardamine hirsuta HOM05D000553 ORTHO05D000460 1.7e-07 60.1 85 37.6
Ca_15269_v3 Cicer arietinum L. HOM05D000553 ORTHO05D003668 1.7e-07 60.1 93 36.6
ECA247G3097 Erigeron canadensis HOM05D000553 ORTHO05D000460 1.7e-07 60.1 93 34.4
Lj6g0002024 Lotus japonicus HOM05D000553 ORTHO05D000460 1.7e-07 60.1 85 37.6
QL07p035818 Quercus lobata HOM05D000553 ORTHO05D000460 1.7e-07 60.1 93 35.5
Aa31LG5G18960 Aethionema arabicum HOM05D000553 ORTHO05D000460 2.2e-07 59.7 85 37.6
arahy.Tifrunner.gnm1.ann1.F9T2J1 Arachis hypogaea HOM05D000553 ORTHO05D000460 2.2e-07 59.7 93 35.5
Cfa001329 Carpinus fangiana HOM05D000553 ORTHO05D000460 2.2e-07 59.7 93 34.4
Duzib093G0452 Durio zibethinus HOM05D000553 ORTHO05D000460 2.2e-07 59.7 91 38.5
FAN03G2890 Fragaria x ananassa HOM05D000553 ORTHO05D000460 2.2e-07 59.7 85 35.3
Gohir.A09G164600 Gossypium hirsutum HOM05D000553 ORTHO05D000460 2.2e-07 59.7 85 38.8
Lalb_Chr04g0250621 Lupinus albus HOM05D000553 ORTHO05D000460 2.2e-07 59.7 93 33.3
Lalb_Chr17g0346741 Lupinus albus HOM05D000553 ORTHO05D000460 2.2e-07 59.7 93 33.3
TAR636G2882 Trochodendron aralioides HOM05D000553 ORTHO05D000460 2.2e-07 59.7 93 34.4
Zm00001eb216920 Zea mays HOM05D000553 ORTHO05D000460 2.2e-07 59.7 93 36.6
Ciclev10033070m.g Citrus clementina HOM05D000553 ORTHO05D000460 2.9e-07 59.3 93 33.3
MD07G1220400 Malus domestica HOM05D000553 ORTHO05D000460 2.9e-07 59.3 93 34.4
TWI73G0316 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 2.9e-07 59.3 93 32.3
Aa31LG10G10850 Aethionema arabicum HOM05D000553 ORTHO05D000460 3.8e-07 58.9 93 33.3
CiPaw.01G249500 Carya illinoinensis HOM05D000553 ORTHO05D000460 3.8e-07 58.9 93 35.5
MD01G1132600 Malus domestica HOM05D000553 ORTHO05D000460 3.8e-07 58.9 93 33.3
Thecc.05G017400 Theobroma cacao HOM05D000553 ORTHO05D000460 3.8e-07 58.9 93 36.6
TWI09G1557 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 3.8e-07 58.9 93 33.3
CSS0025442 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 4.9e-07 58.5 93 33.3
Cpa.g.sc19.186 Carica papaya HOM05D000553 ORTHO05D000460 4.9e-07 58.5 93 33.3
CiPaw.01G297500 Carya illinoinensis HOM05D000553 ORTHO05D000460 4.9e-07 58.5 93 33.3
Dinv23094 Davidia involucrata HOM05D000553 ORTHO05D000460 4.9e-07 58.5 93 33.3
Eucgr.J00225 Eucalyptus grandis HOM05D000553 ORTHO05D000460 4.9e-07 58.5 93 35.5
Gohir.D13G016900 Gossypium hirsutum HOM05D000553 ORTHO05D000460 4.9e-07 58.5 93 34.4
Medtr3g070330 Medicago truncatula HOM05D000553 ORTHO05D000460 4.9e-07 58.5 93 35.5
Sc11g0005000 Simmondsia chinensis HOM05D000553 ORTHO05D000460 4.9e-07 58.5 85 35.3
Actinidia13931 Actinidia chinensis HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 34.4
AL3G20010 Arabidopsis lyrata HOM05D000553 ORTHO05D000460 6.4e-07 58.2 85 38.8
CSS0040155 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 34.4
AUR62011037 Chenopodium quinoa HOM05D000553 ORTHO05D000460 6.4e-07 58.2 85 36.5
FvH4_7g24340 Fragaria vesca HOM05D000553 ORTHO05D000460 6.4e-07 58.2 85 34.1
FAN06G1361 Fragaria x ananassa HOM05D000553 ORTHO05D000460 6.4e-07 58.2 85 34.1
Glyma.02G256700 Glycine max HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 34.4
Gohir.A05G329500 Gossypium hirsutum HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 33.3
Gohir.D04G067500 Gossypium hirsutum HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 33.3
HanXRQChr10g0293791 Helianthus annuus HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 34.4
Hund09174 Selenicereus undatus HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 34.4
TAR636G2175 Trochodendron aralioides HOM05D000553 ORTHO05D000460 6.4e-07 58.2 93 33.3
Cfa017215 Carpinus fangiana HOM05D000553 ORTHO05D000460 8.4e-07 57.8 93 35.5
CiPaw.02G191700 Carya illinoinensis HOM05D000553 ORTHO05D000460 8.4e-07 57.8 93 33.3
Gorai.013G018700 Gossypium raimondii HOM05D000553 ORTHO05D000460 8.4e-07 57.8 85 35.3
PSO801G0637 Papaver somniferum HOM05D000553 ORTHO05D000460 8.4e-07 57.8 85 37.6
Potri.010G190000 Populus trichocarpa HOM05D000553 ORTHO05D000460 8.4e-07 57.8 93 34.4
Sp4g22420 Schrenkiella parvula HOM05D000553 ORTHO05D000460 8.4e-07 57.8 93 35.5
TPR.G2519 Trifolium pratense HOM05D000553 ORTHO05D000460 8.4e-07 57.8 93 34.4
TWI77G0351 Tripterygium wilfordii HOM05D000553 ORTHO05D000460 8.4e-07 57.8 85 36.5
AT3G08990 Arabidopsis thaliana HOM05D000553 ORTHO05D000460 1.1e-06 57.4 85 38.8
Carub.0003s0812 Capsella rubella HOM05D000553 ORTHO05D000460 1.1e-06 57.4 85 37.6
Gohir.A13G015800 Gossypium hirsutum HOM05D000553 ORTHO05D000460 1.1e-06 57.4 93 35.5
Phvul.001G242000 Phaseolus vulgaris HOM05D000553 ORTHO05D000460 1.1e-06 57.4 85 35.3
Prupe.2G248800 Prunus persica HOM05D000553 ORTHO05D000460 1.1e-06 57.4 93 34.4
QL07p035830 Quercus lobata HOM05D000553 ORTHO05D000460 1.1e-06 57.4 85 35.3
Thecc.10G020500 Theobroma cacao HOM05D000553 ORTHO05D000460 1.1e-06 57.4 85 36.5
EL10Ac8g18552 Beta vulgaris HOM05D000553 ORTHO05D000460 1.4e-06 57.0 85 37.6
EL10Ac8g18554 Beta vulgaris HOM05D000553 ORTHO05D000460 1.4e-06 57.0 85 37.6
BcaB06g29128 Brassica carinata HOM05D000553 ORTHO05D000460 1.4e-06 57.0 93 34.4
CSS0046582 Camellia sinensis var. sinensis HOM05D000553 ORTHO05D000460 1.4e-06 57.0 93 33.3
Ciclev10013102m.g Citrus clementina HOM05D000553 ORTHO05D000460 1.4e-06 57.0 85 36.5
Dinv17982 Davidia involucrata HOM05D000553 ORTHO05D000460 1.4e-06 57.0 93 32.3
Duzib106G0047 Durio zibethinus HOM05D000553 ORTHO05D000460 1.4e-06 57.0 85 38.8
FAN01G1959 Fragaria x ananassa HOM05D000553 ORTHO05D000460 1.4e-06 57.0 85 34.1
Lsat_1_v5_gn_9_33821 Lactuca sativa HOM05D000553 ORTHO05D000460 1.4e-06 57.0 93 33.3
Nitab4.5_0000335g0200 Nicotiana tabacum HOM05D000553 ORTHO05D000460 1.4e-06 57.0 85 36.5
Peaxi162Scf00825g00027 Petunia axillaris HOM05D000553 ORTHO05D000460 1.4e-06 57.0 93 34.4
SalBow6G4828 Salvia bowleyana HOM05D000553 ORTHO05D000460 1.4e-06 57.0 85 36.5
Atru.chr12.20 Acer truncatum HOM05D000553 ORTHO05D000460 1.9e-06 56.6 93 33.3
Manes.07G128400 Manihot esculenta HOM05D000553 ORTHO05D000460 1.9e-06 56.6 85 35.3
Nn2g11461 Nelumbo nucifera HOM05D000553 ORTHO05D000460 1.9e-06 56.6 93 33.3
Psat5g126360 Pisum sativum HOM05D000553 ORTHO05D000460 1.9e-06 56.6 93 35.5
Sp3g07410 Schrenkiella parvula HOM05D000553 ORTHO05D000460 1.9e-06 56.6 85 36.5
GSVIVG01032842001 Vitis vinifera HOM05D000553 ORTHO05D000460 1.9e-06 56.6 93 32.3
Actinidia20728 Actinidia chinensis HOM05D000553 ORTHO05D000460 2.4e-06 56.2 89 37.1
Aqoxy2G00922 Aquilegia oxysepala HOM05D000553 ORTHO05D000460 2.4e-06 56.2 93 34.4
FAN10G3202 Fragaria x ananassa HOM05D000553 ORTHO05D000460 2.4e-06 56.2 85 34.1
Glyma.18G028500 Glycine max HOM05D000553 ORTHO05D000460 2.4e-06 56.2 85 34.1
Gohir.A11G329400 Gossypium hirsutum HOM05D000553 ORTHO05D000460 2.4e-06 56.2 93 35.5
Gohir.D11G348500 Gossypium hirsutum HOM05D000553 ORTHO05D000460 2.4e-06 56.2 93 35.5
Sed0019405 Sechium edule HOM05D000553 ORTHO05D000460 2.4e-06 56.2 85 32.9
Actinidia29694 Actinidia chinensis HOM05D000553 ORTHO05D000460 3.2e-06 55.8 93 33.3
Actinidia33930 Actinidia chinensis HOM05D000553 ORTHO05D000460 3.2e-06 55.8 93 33.3
MELO3C025175.2 Cucumis melo HOM05D000553 ORTHO05D000460 3.2e-06 55.8 85 35.3
Gorai.007G378800 Gossypium raimondii HOM05D000553 ORTHO05D000460 3.2e-06 55.8 93 34.4
Manes.08G091500 Manihot esculenta HOM05D000553 ORTHO05D000460 3.2e-06 55.8 93 35.5
PSO339G0673 Papaver somniferum HOM05D000553 ORTHO05D000460 3.2e-06 55.8 85 36.5
SalBow4G2684 Salvia bowleyana HOM05D000553 ORTHO05D000460 3.2e-06 55.8 93 34.4
BcaC02g07353 Brassica carinata HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 33.3
A04p30060 Brassica napus HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 33.3
C04p67790 Brassica napus HOM05D000553 ORTHO05D003668 4.2e-06 55.5 93 33.3
BolC4t28283H Brassica oleracea HOM05D000553 ORTHO05D003668 4.2e-06 55.5 93 33.3
BraA04t18500Z Brassica rapa HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 33.3
CiPaw.09G208400 Carya illinoinensis HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 33.3
ClCG11G006240 Citrullus lanatus HOM05D000553 ORTHO05D000460 4.2e-06 55.5 85 32.9
CsaV3_6G001750 Cucumis sativus L. HOM05D000553 ORTHO05D000460 4.2e-06 55.5 85 32.9
Dinv34394 Davidia involucrata HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 33.3
Duzib106G1055 Durio zibethinus HOM05D000553 ORTHO05D000460 4.2e-06 55.5 85 36.5
Migut.F00676 Erythranthe guttata HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 32.3
Gorai.012G076700 Gossypium raimondii HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 32.3
Oeu024614.2 Olea europaea HOM05D000553 ORTHO05D000460 4.2e-06 55.5 93 33.3
Sc10g0002290 Simmondsia chinensis HOM05D000553 ORTHO05D000460 4.2e-06 55.5 85 34.1
AL4G37760 Arabidopsis lyrata HOM05D000553 ORTHO05D000460 5.4e-06 55.1 93 33.3
Carub.0004s2228 Capsella rubella HOM05D000553 ORTHO05D000460 5.4e-06 55.1 93 33.3
Haze_17215 Corylus avellana HOM05D000553 ORTHO05D000460 5.4e-06 55.1 104 31.7
MELO3C008289.2 Cucumis melo HOM05D000553 ORTHO05D000460 5.4e-06 55.1 85 32.9
DCAR_011805 Daucus carota HOM05D000553 ORTHO05D000460 5.4e-06 55.1 85 34.1
Glyma.11G228600 Glycine max HOM05D000553 ORTHO05D000460 5.4e-06 55.1 85 34.1
Hund15946 Selenicereus undatus HOM05D000553 ORTHO05D000460 5.4e-06 55.1 93 32.3
Aa31LG5G19490 Aethionema arabicum HOM05D000553 ORTHO05D000460 7.1e-06 54.7 93 33.3
Hma1.2p1_0446F.1_g154560 Hydrangea macrophylla HOM05D000553 ORTHO05D000460 7.1e-06 54.7 93 32.3
Manes.10G013800 Manihot esculenta HOM05D000553 ORTHO05D000460 7.1e-06 54.7 93 34.4
Oeu064507.1 Olea europaea HOM05D000553 ORTHO05D000460 7.1e-06 54.7 93 36.6
Zm00001eb053850 Zea mays HOM05D000553 ORTHO05D000460 7.1e-06 54.7 91 35.2
CARHR135080 Cardamine hirsuta HOM05D000553 ORTHO05D000460 9.2e-06 54.3 93 33.3
Migut.L02006 Erythranthe guttata HOM05D000553 ORTHO05D000460 9.2e-06 54.3 93 35.5
Oeu033600.1 Olea europaea HOM05D000553 ORTHO05D000460 9.2e-06 54.3 85 35.3
Os03g0698500 Oryza sativa ssp. japonica HOM05D000553 ORTHO05D020606 9.2e-06 54.3 32 68.8
Sp5g06610 Schrenkiella parvula HOM05D000553 ORTHO05D000460 9.2e-06 54.3 85 36.5


User provided reference genes

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