Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 1.7e-31 139.0 88 100.0
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 2.3e-28 128.6 88 84.1
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 2.3e-28 128.6 88 94.3
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 2.3e-28 128.6 88 84.1
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 6.7e-28 127.1 88 93.2
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 6.7e-28 127.1 88 93.2
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 4.3e-27 124.4 88 80.7
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 4.3e-27 124.4 88 80.7
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 4.3e-27 124.4 88 80.7
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 4.3e-27 124.4 88 80.7
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 8.2e-26 120.2 88 83.0
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-25 119.8 88 78.4
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 1.1e-25 119.8 88 78.4
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 1.4e-25 119.4 88 86.4
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 1.4e-25 119.4 88 86.4
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 6.9e-25 117.1 88 85.2
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 2.6e-24 115.2 88 76.1
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 4.9e-23 110.9 88 72.7
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 6.5e-23 110.5 88 72.7
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 6.5e-23 110.5 88 73.9
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.5e-22 108.6 88 84.1
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.7e-18 94.7 88 64.8
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.1e-17 93.2 85 64.7
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 7.7e-16 87.0 62 77.4
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.7e-15 85.9 57 78.9
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 6.9e-09 63.9 52 67.3
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 4.5e-08 61.2 52 63.5
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 5.9e-08 60.8 52 63.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 5.9e-08 60.8 52 63.5
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 7.7e-08 60.5 53 62.3
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 61.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 65.4
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 63.5
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 7.7e-08 60.5 52 61.5
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 1.0e-07 60.1 52 61.5
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.3e-07 59.7 53 58.5
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 1.7e-07 59.3 48 68.8
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 2.2e-07 58.9 52 63.5
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 2.2e-07 58.9 51 62.7
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 5.0e-07 57.8 50 64.0
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 6.5e-07 57.4 52 59.6
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 8.5e-07 57.0 52 57.7
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 1.1e-06 56.6 51 60.8
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 1.4e-06 56.2 52 55.8
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.4e-06 56.2 52 57.7
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.9e-06 55.8 50 54.0
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 3.2e-06 55.1 52 55.8
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 5.5e-06 54.3 52 55.8
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 7.2e-06 53.9 52 57.7


User provided reference genes

Program Settings