Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30009 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-54 216.1 102 100.0
A02p37320 Brassica napus HOM05D001603 ORTHO05D001393 2.0e-47 192.2 102 89.2
BraA02t08718Z Brassica rapa HOM05D001603 ORTHO05D001393 2.0e-47 192.2 102 89.2
BcaB07g30008 Brassica carinata HOM05D001603 ORTHO05D001393 5.7e-47 190.7 99 88.9
C02p56390 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-46 189.5 100 90.0
BolC2t11697H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-46 189.5 100 90.0
BcaC03g17639 Brassica carinata HOM05D001603 ORTHO05D001393 3.7e-46 188.0 102 88.2
BcaC03g17638 Brassica carinata HOM05D001603 ORTHO05D001393 5.3e-45 184.1 100 87.0
A02p37310 Brassica napus HOM05D001603 ORTHO05D001393 1.6e-44 182.6 102 84.3
BraA02t08717Z Brassica rapa HOM05D001603 ORTHO05D001393 3.5e-44 181.4 100 85.0
A02p37330 Brassica napus HOM05D001603 ORTHO05D001393 8.8e-40 166.8 103 75.7
BraA02t08719Z Brassica rapa HOM05D001603 ORTHO05D001393 8.8e-40 166.8 103 75.7
BcaC03g17637 Brassica carinata HOM05D001603 ORTHO05D001393 5.9e-36 154.1 97 75.3
C02p56360 Brassica napus HOM05D001603 ORTHO05D001393 2.9e-35 151.8 97 75.3
BolC2t11693H Brassica oleracea HOM05D001603 ORTHO05D001393 2.9e-35 151.8 97 75.3
BcaB07g30007 Brassica carinata HOM05D001603 ORTHO05D001393 6.5e-35 150.6 97 72.2
BraA02t08716Z Brassica rapa HOM05D001603 ORTHO05D001393 6.5e-35 150.6 97 74.2
BcaC06g30819 Brassica carinata HOM05D001603 ORTHO05D001393 5.5e-34 147.5 98 67.3
A02p37300 Brassica napus HOM05D001603 ORTHO05D001393 5.5e-34 147.5 97 73.2
BcaC03g17640 Brassica carinata HOM05D001603 ORTHO05D001393 8.8e-32 140.2 88 73.9
Thhalv10005180m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 1.5e-31 139.4 97 67.0
Carub.0008s0778 Capsella rubella HOM05D001603 ORTHO05D001393 8.0e-25 117.1 108 53.7
AT5G48210 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-23 113.2 97 58.8
CARHR184130 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.7e-23 110.9 98 57.1
AL8G20900 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 2.9e-14 82.0 68 61.8
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 1.1e-10 70.1 85 40.0
Aa31LG5G23090 Aethionema arabicum HOM05D001603 ORTHO05D001393 1.9e-10 69.3 98 39.8
AT5G42895 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.5e-10 68.9 77 42.9
Thhalv10005158m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 2.5e-10 68.9 92 37.0
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.5e-10 68.9 102 41.2
Lj7C438T17 Lonicera japonica HOM05D001603 ORTHO05D001393 4.3e-10 68.2 94 38.3
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 5.6e-10 67.8 102 40.2
CARHR181490 Cardamine hirsuta HOM05D001603 ORTHO05D001393 7.3e-10 67.4 104 37.5
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 7.3e-10 67.4 102 39.2
AT3G42565 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 9.5e-10 67.0 107 40.2
CARHR042770 Cardamine hirsuta HOM05D001603 ORTHO05D001393 9.5e-10 67.0 91 40.7
Sp1g35035 Schrenkiella parvula HOM05D001603 ORTHO05D001393 9.5e-10 67.0 114 35.1
THA.LOC104807823 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 9.5e-10 67.0 80 42.5
AL8G25360 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.2e-09 66.6 66 42.4
AT4G09545 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.1e-09 65.9 91 39.6
AT5G36370 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.8e-09 65.5 77 42.9
AT5G36540 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.8e-09 65.5 77 42.9
AT5G36657 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.8e-09 65.5 97 39.2
Lj7A438G59 Lonicera japonica HOM05D001603 ORTHO05D001393 3.6e-09 65.1 77 42.9
THA.LOC104807891 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.6e-09 65.1 67 44.8
AT5G36350 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36360 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36380 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36390 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36400 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36410 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36420 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36430 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36440 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36450 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36460 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36470 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36480 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
AT5G36520 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.7e-09 64.7 108 39.8
BcaC06g33682 Brassica carinata HOM05D001603 ORTHO05D001393 4.7e-09 64.7 77 36.4
C07p38140 Brassica napus HOM05D001603 ORTHO05D001393 4.7e-09 64.7 77 36.4
BolC7t44336H Brassica oleracea HOM05D001603 ORTHO05D001393 4.7e-09 64.7 77 36.4
AL5G28100 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 6.2e-09 64.3 84 39.3
AL7G16040 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 6.2e-09 64.3 80 36.2
AT5G36490 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.2e-09 64.3 108 39.8
AT5G36550 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 6.2e-09 64.3 108 39.8
THA.LOC104807824 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 6.2e-09 64.3 67 44.8
AT5G36500 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.0e-09 63.9 108 39.8
AT5G36658 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.0e-09 63.9 77 41.6
BcaC01g06102 Brassica carinata HOM05D001603 ORTHO05D001393 8.0e-09 63.9 64 43.8
BcaC01g06105 Brassica carinata HOM05D001603 ORTHO05D001393 8.0e-09 63.9 64 43.8
A06p40030 Brassica napus HOM05D001603 ORTHO05D001393 8.0e-09 63.9 94 34.0
BraA06t26918Z Brassica rapa HOM05D001603 ORTHO05D001393 8.0e-09 63.9 94 34.0
FAN06G4924 Fragaria x ananassa HOM05D001603 ORTHO05D001393 8.0e-09 63.9 102 36.3
THA.LOC104801737 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 8.0e-09 63.9 66 42.4
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 8.0e-09 63.9 90 36.7
Aqoxy1G00790 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 1.1e-08 63.5 67 38.8
BcaB07g30090 Brassica carinata HOM05D001603 ORTHO05D001393 1.1e-08 63.5 93 35.5
RcHm_v2.0_Chr2g0087141 Rosa chinensis HOM05D001603 ORTHO05D001393 1.1e-08 63.5 84 40.5
THA.LOC104809119 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 1.1e-08 63.5 66 42.4
AT5G36661 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.4e-08 63.2 107 39.3
AT5G36738 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.4e-08 63.2 107 39.3
BcaC07g37175 Brassica carinata HOM05D001603 ORTHO05D001393 1.4e-08 63.2 79 44.3
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 1.8e-08 62.8 69 36.2
Carub.0007s0514 Capsella rubella HOM05D001603 ORTHO05D001393 1.8e-08 62.8 76 38.2
CARHR187420 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.8e-08 62.8 89 41.6
CiPaw.03G252200 Carya illinoinensis HOM05D001603 ORTHO05D001393 1.8e-08 62.8 62 43.5
RcHm_v2.0_Chr1g0323971 Rosa chinensis HOM05D001603 ORTHO05D001393 2.3e-08 62.4 102 35.3
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 2.3e-08 62.4 98 34.7
Aqoxy6G02756 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 3.1e-08 62.0 67 37.3
AT2G14378 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.1e-08 62.0 80 36.2
BcaC07g37178 Brassica carinata HOM05D001603 ORTHO05D001393 3.1e-08 62.0 76 44.7
A08p06960 Brassica napus HOM05D001603 ORTHO05D001393 3.1e-08 62.0 91 38.5
C02p62770 Brassica napus HOM05D001603 ORTHO05D001393 3.1e-08 62.0 93 31.2
C08p05570 Brassica napus HOM05D001603 ORTHO05D001393 3.1e-08 62.0 111 36.9
BolC2t12348H Brassica oleracea HOM05D001603 ORTHO05D001393 3.1e-08 62.0 93 31.2
CARHR042990 Cardamine hirsuta HOM05D001603 ORTHO05D001393 3.1e-08 62.0 89 36.0
Thhalv10005657m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 4.0e-08 61.6 94 35.1
Sp2g17840 Schrenkiella parvula HOM05D001603 ORTHO05D001393 4.0e-08 61.6 94 34.0
BcaC07g37174 Brassica carinata HOM05D001603 ORTHO05D001393 5.2e-08 61.2 76 43.4
A08p06920 Brassica napus HOM05D001603 ORTHO05D001393 5.2e-08 61.2 78 42.3
CARHR243480 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.2e-08 61.2 93 36.6
CARHR274670 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.2e-08 61.2 79 41.8
THA.LOC104811298 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 5.2e-08 61.2 66 45.5
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 6.8e-08 60.8 80 40.0
AT3G48675 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 8.9e-08 60.5 84 36.9
BcaC03g18210 Brassica carinata HOM05D001603 ORTHO05D001393 8.9e-08 60.5 72 33.3
A08p06940 Brassica napus HOM05D001603 ORTHO05D001393 8.9e-08 60.5 107 36.4
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 8.9e-08 60.5 76 38.2
AT4G35165 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.2e-07 60.1 80 33.8
BcaC07g37179 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-07 60.1 76 43.4
BcaC07g37231 Brassica carinata HOM05D001603 ORTHO05D001393 1.2e-07 60.1 91 38.5
A08p05250 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-07 60.1 76 43.4
A08p05310 Brassica napus HOM05D001603 ORTHO05D001393 1.2e-07 60.1 76 42.1
BcaC07g37177 Brassica carinata HOM05D001603 ORTHO05D001393 1.5e-07 59.7 91 38.5
A08p05300 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-07 59.7 91 38.5
C08p05610 Brassica napus HOM05D001603 ORTHO05D001393 1.5e-07 59.7 91 38.5
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 2.0e-07 59.3 80 40.0
CARHR016560 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.0e-07 59.3 92 37.0
Peaxi162Scf01694g00006 Petunia axillaris HOM05D001603 ORTHO05D001393 2.0e-07 59.3 64 35.9
A08p06930 Brassica napus HOM05D001603 ORTHO05D001393 2.6e-07 58.9 91 37.4
C08p05590 Brassica napus HOM05D001603 ORTHO05D001393 2.6e-07 58.9 76 43.4
TWI63G0036 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 2.6e-07 58.9 67 35.8
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.4e-07 58.5 73 39.7
THA.LOC104809637 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 3.4e-07 58.5 66 42.4
TWI34G1530 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 3.4e-07 58.5 64 39.1
A08p05260 Brassica napus HOM05D001603 ORTHO05D001393 5.8e-07 57.8 91 37.4
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 5.8e-07 57.8 75 37.3
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 7.5e-07 57.4 66 34.8
AT5G36310 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.5e-07 57.4 77 40.3
AT5G36340 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 7.5e-07 57.4 77 40.3
A08p06950 Brassica napus HOM05D001603 ORTHO05D001393 7.5e-07 57.4 76 40.8
CARHR256980 Cardamine hirsuta HOM05D001603 ORTHO05D001393 7.5e-07 57.4 116 33.6
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 9.8e-07 57.0 66 34.8
CARHR154350 Cardamine hirsuta HOM05D001603 ORTHO05D001393 9.8e-07 57.0 84 35.7
THA.LOC104811131 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 9.8e-07 57.0 64 42.2
THA.LOC104811299 Tarenaya hassleriana HOM05D001603 ORTHO05D001393 9.8e-07 57.0 64 42.2
BcaC07g37176 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-06 56.6 91 37.4
Aa31sc88G60 Aethionema arabicum HOM05D001603 ORTHO05D001393 1.7e-06 56.2 67 40.3
A08p05270 Brassica napus HOM05D001603 ORTHO05D001393 1.7e-06 56.2 68 42.6
A08p05320 Brassica napus HOM05D001603 ORTHO05D001393 1.7e-06 56.2 68 44.1
C08p05580 Brassica napus HOM05D001603 ORTHO05D001393 1.7e-06 56.2 76 42.1
BolC2t11698H Brassica oleracea HOM05D001603 ORTHO05D105513 1.7e-06 56.2 44 72.7
AT5G36330 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.2e-06 55.8 77 39.0
AT5G51105 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.2e-06 55.8 78 32.1
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 2.9e-06 55.5 79 34.2
Thecc.09G137000 Theobroma cacao HOM05D001603 ORTHO05D001393 2.9e-06 55.5 78 33.3
PGSC0003DMG400004472 Solanum tuberosum HOM05D001603 ORTHO05D001393 3.7e-06 55.1 68 35.3
SGA_v2.0_scaffold24G10427 Striga asiatica HOM05D001603 ORTHO05D001393 3.7e-06 55.1 63 36.5
AT5G36662 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.9e-06 54.7 107 35.5
AT5G36739 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 4.9e-06 54.7 107 35.5
C08p05560 Brassica napus HOM05D001603 ORTHO05D001393 4.9e-06 54.7 78 41.0
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 4.9e-06 54.7 68 36.8
Atru.chr7.2004 Acer truncatum HOM05D001603 ORTHO05D001393 6.4e-06 54.3 69 34.8
A08p05280 Brassica napus HOM05D001603 ORTHO05D001393 6.4e-06 54.3 68 42.6
A08p05290 Brassica napus HOM05D001603 ORTHO05D001393 6.4e-06 54.3 68 42.6
C03p34370 Brassica napus HOM05D001603 ORTHO05D001393 6.4e-06 54.3 110 31.8
BolC3t15747H Brassica oleracea HOM05D001603 ORTHO05D001393 6.4e-06 54.3 110 31.8
Gohir.D08G101050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 6.4e-06 54.3 73 37.0
Gorai.004G109000 Gossypium raimondii HOM05D001603 ORTHO05D001393 6.4e-06 54.3 73 37.0
A03p28440 Brassica napus HOM05D001603 ORTHO05D001393 8.3e-06 53.9 110 31.8
BraA03t12049Z Brassica rapa HOM05D001603 ORTHO05D001393 8.3e-06 53.9 110 31.8
CAN.G184.54 Capsicum annuum HOM05D001603 ORTHO05D001393 8.3e-06 53.9 65 32.3


User provided reference genes

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