Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 7.4e-118 427.2 210 100.0
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 7.8e-59 231.1 232 56.5
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 7.8e-59 231.1 232 56.5
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-57 226.9 232 56.0
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 2.6e-54 216.1 236 53.4
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 5.8e-54 214.9 231 54.1
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 3.0e-50 202.6 190 61.1
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 7.4e-41 171.4 296 41.6
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.3e-40 170.6 106 77.4
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.7e-40 169.1 352 36.9
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 8.1e-40 167.9 132 67.4
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-38 163.7 353 36.5
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-38 163.7 353 36.5
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.5e-38 163.7 353 36.5
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.5e-38 163.7 353 36.5
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-37 160.6 107 74.8
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 8.4e-37 157.9 97 73.2
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.4e-36 157.1 97 73.2
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.9e-36 156.8 97 76.3
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 5.5e-36 155.2 98 74.5
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.2e-35 154.1 94 81.9
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.3e-26 124.0 98 60.2
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 9.7e-25 117.9 94 54.3
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 1.6e-24 117.1 94 54.3
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 8.2e-24 114.8 94 54.3
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 8.2e-24 114.8 94 54.3
BcaC03g17870 Brassica carinata HOM05D011290 ORTHO05D010021 3.1e-23 112.8 229 38.4
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 4.1e-23 112.5 94 51.1
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 2.0e-22 110.2 94 53.2
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 2.0e-22 110.2 94 52.1
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 3.4e-22 109.4 93 48.4
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 7.7e-22 108.2 94 48.9
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.0e-21 107.8 93 47.3
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.9e-21 106.3 92 50.0
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.9e-21 106.3 92 50.0
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 2.9e-21 106.3 94 51.1
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 2.9e-21 106.3 94 51.1
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.8e-21 105.9 92 51.1
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 8.5e-21 104.8 94 50.0
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 8.5e-21 104.8 94 51.1
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 4.2e-20 102.4 94 48.9
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.7e-19 99.8 94 47.9
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 3.6e-19 99.4 92 46.7
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.0e-18 97.8 94 47.9
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.4e-18 97.4 94 50.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 3.9e-18 95.9 93 44.1
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.3e-17 92.8 90 51.1
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 5.7e-17 92.0 91 48.4
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 1.3e-16 90.9 87 48.3
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.8e-16 89.7 91 46.2
BolC2t11965H Brassica oleracea HOM05D003663 ORTHO05D010021 4.8e-16 89.0 61 77.0
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 8.2e-16 88.2 94 42.6
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.1e-15 87.8 91 45.1
Sp2g21380 Schrenkiella parvula HOM05D003663 ORTHO05D010021 1.4e-15 87.4 61 68.9
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.4e-15 86.7 95 44.2
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 2.4e-15 86.7 91 44.0
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 3.1e-15 86.3 91 44.0
Thhalv10005177m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 4.1e-15 85.9 69 62.3
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 5.3e-15 85.5 92 44.6
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 5.3e-15 85.5 92 44.6
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 5.3e-15 85.5 93 43.0
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 6.9e-15 85.1 90 43.3
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 6.9e-15 85.1 92 43.5
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 6.9e-15 85.1 92 44.6
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.2e-14 84.3 90 45.6
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.5e-14 84.0 95 43.2
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.0e-14 83.6 92 43.5
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.0e-14 83.6 94 42.6
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.6e-14 83.2 91 39.6
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.6e-14 83.2 91 45.1
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 2.6e-14 83.2 90 43.3
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 3.4e-14 82.8 92 44.6
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.5e-14 82.4 95 40.0
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 4.5e-14 82.4 90 40.0
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 5.9e-14 82.0 94 38.3
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 5.9e-14 82.0 90 43.3
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 5.9e-14 82.0 94 40.4
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.7e-14 81.6 90 41.1
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 7.7e-14 81.6 94 41.5
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 7.7e-14 81.6 92 42.4
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.0e-13 81.3 95 40.0
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.0e-13 81.3 90 42.2
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.0e-13 81.3 90 42.2
Carub.0006s2421 Capsella rubella HOM05D003663 ORTHO05D010021 1.3e-13 80.9 62 67.7
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.7e-13 80.5 94 40.4
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.7e-13 80.5 92 43.5
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.7e-13 80.5 93 39.8
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.2e-13 80.1 90 40.0
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.2e-13 80.1 91 42.9
BcaC04g23625 Brassica carinata HOM05D003663 ORTHO05D010021 2.9e-13 79.7 57 70.2
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 2.9e-13 79.7 94 39.4
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.8e-13 79.3 92 40.2
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 3.8e-13 79.3 90 40.0
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 3.8e-13 79.3 90 40.0
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 3.8e-13 79.3 89 38.2
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 5.0e-13 79.0 90 40.0
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 5.0e-13 79.0 91 41.8
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 5.0e-13 79.0 90 40.0
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 6.5e-13 78.6 94 39.4
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 6.5e-13 78.6 90 41.1
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.1e-12 77.8 90 41.1
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.9e-12 77.0 93 37.6
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.9e-12 77.0 90 41.1
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 1.9e-12 77.0 92 40.2
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.9e-12 77.0 96 39.6
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.5e-12 76.6 90 38.9
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 3.2e-12 76.3 92 39.1
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 4.2e-12 75.9 65 50.8
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 5.5e-12 75.5 90 37.8
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 7.2e-12 75.1 90 36.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 9.4e-12 74.7 95 38.9
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 9.4e-12 74.7 94 38.3
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-11 74.3 92 40.2
C02p59100 Brassica napus HOM05D003663 ORTHO05D010021 1.2e-11 74.3 57 71.9
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.2e-11 74.3 95 36.8
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.2e-11 74.3 90 36.7
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.6e-11 73.9 95 36.8
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.6e-11 73.9 95 36.8
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 2.1e-11 73.6 90 37.8
BcaNung02824 Brassica carinata HOM05D003663 ORTHO05D010021 2.7e-11 73.2 69 60.9
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 2.7e-11 73.2 90 38.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.7e-11 73.2 90 36.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.6e-11 72.8 90 35.6
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 3.6e-11 72.8 90 38.9
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 4.7e-11 72.4 92 37.0
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 4.7e-11 72.4 90 34.4
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 4.7e-11 72.4 90 36.7
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 4.7e-11 72.4 90 36.7
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 7.9e-11 71.6 95 36.8
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 7.9e-11 71.6 90 35.6
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.0e-10 71.2 90 36.7
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.0e-10 71.2 92 33.7
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.0e-10 71.2 92 34.8
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.4e-10 70.9 90 36.7
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.4e-10 70.9 90 36.7
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.4e-10 70.9 90 34.4
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 1.4e-10 70.9 97 41.2
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 1.4e-10 70.9 90 35.6
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.8e-10 70.5 90 36.7
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.8e-10 70.5 89 34.8
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.8e-10 70.5 90 35.6
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 2.3e-10 70.1 91 36.3
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 3.0e-10 69.7 90 35.6
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 3.9e-10 69.3 90 34.4
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.9e-10 69.3 97 37.1
CARHR186970 Cardamine hirsuta HOM05D003663 ORTHO05D010021 5.1e-10 68.9 58 67.2
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-09 67.8 95 36.8
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 3.3e-09 66.2 90 36.7
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 5.7e-09 65.5 89 34.8
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 5.7e-09 65.5 93 35.5
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 5.7e-09 65.5 93 35.5
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 7.4e-09 65.1 94 35.1
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 9.7e-09 64.7 90 34.4
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.7e-08 63.9 102 35.3
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 6.3e-08 62.0 79 34.2
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 1.1e-07 61.2 94 31.9
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.2e-06 57.8 94 30.9
Thhalv10021806m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 2.0e-06 57.0 64 50.0


User provided reference genes

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