Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29880 Brassica carinata HOM05D000706 ORTHO05D001554 3.8e-61 238.0 126 100.0
A02p40950 Brassica napus HOM05D000706 ORTHO05D001554 3.0e-37 158.7 126 64.3
BraA02t09041Z Brassica rapa HOM05D000706 ORTHO05D001554 3.0e-37 158.7 126 64.3
C02p60840 Brassica napus HOM05D000706 ORTHO05D001554 1.6e-35 152.9 127 70.1
BolC2t12136H Brassica oleracea HOM05D000706 ORTHO05D001554 1.1e-34 150.2 119 71.4
Sp2g23700 Schrenkiella parvula HOM05D000706 ORTHO05D001554 2.0e-33 146.0 126 62.7
CARHR190040 Cardamine hirsuta HOM05D000706 ORTHO05D001554 9.9e-25 117.1 144 56.2
AL6G34760 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 1.4e-23 113.2 145 51.7
Carub.0006s2126 Capsella rubella HOM05D000706 ORTHO05D001554 9.6e-20 100.5 136 51.5
Thhalv10003998m.g Eutrema salsugineum HOM05D000706 ORTHO05D001554 1.6e-19 99.8 131 52.7
BcaNung03856 Brassica carinata HOM05D000706 ORTHO05D001554 1.1e-18 97.1 63 63.5
Aa31LG11G2890 Aethionema arabicum HOM05D000706 ORTHO05D001554 4.4e-17 91.7 117 50.4
Carub.0006s0735 Capsella rubella HOM05D000706 ORTHO05D001554 1.9e-12 76.3 100 47.0
AT5G08430 Arabidopsis thaliana HOM05D000706 ORTHO05D001554 5.6e-12 74.7 126 39.7
Sp6g34490 Schrenkiella parvula HOM05D000706 ORTHO05D001554 1.6e-11 73.2 126 37.3
Thhalv10013270m.g Eutrema salsugineum HOM05D000706 ORTHO05D001554 2.8e-11 72.4 126 37.3
AL6G18900 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 1.1e-10 70.5 97 41.2
THA.LOC104818393 Tarenaya hassleriana HOM05D000706 ORTHO05D001554 2.4e-10 69.3 101 40.6
C02p03620 Brassica napus HOM05D000706 ORTHO05D001554 5.3e-10 68.2 144 34.0
CARHR204580 Cardamine hirsuta HOM05D000706 ORTHO05D001554 1.5e-09 66.6 98 39.8
BraA02t04959Z Brassica rapa HOM05D000706 ORTHO05D001554 4.5e-09 65.1 144 34.0
BcaC03g13230 Brassica carinata HOM05D000706 ORTHO05D001554 7.6e-09 64.3 141 34.8
arahy.Tifrunner.gnm1.ann1.JT5ALL Arachis hypogaea HOM05D000706 ORTHO05D001554 1.7e-08 63.2 99 46.5
arahy.Tifrunner.gnm1.ann1.KX39Z4 Arachis hypogaea HOM05D000706 ORTHO05D001554 1.7e-08 63.2 99 46.5
Aa31LG3G18110 Aethionema arabicum HOM05D000706 ORTHO05D001554 2.2e-08 62.8 135 33.3
Lalb_Chr24g0398681 Lupinus albus HOM05D000706 ORTHO05D001554 8.4e-08 60.8 127 41.7
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 8.4e-08 60.8 63 46.0
GSVIVG01000269001 Vitis vinifera HOM05D000706 ORTHO05D001554 8.4e-08 60.8 54 51.9
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 1.4e-07 60.1 124 33.1
Ca_25266_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 1.4e-07 60.1 112 33.9
Nitab4.5_0000634g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.4e-07 60.1 95 37.9
RcHm_v2.0_Chr3g0484911 Rosa chinensis HOM05D000706 ORTHO05D001554 1.4e-07 60.1 125 33.6
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 1.4e-07 60.1 82 39.0
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.9e-07 59.7 117 35.0
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 1.9e-07 59.7 60 46.7
CAN.G170.123 Capsicum annuum HOM05D000706 ORTHO05D001554 2.4e-07 59.3 110 34.5
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.4e-07 59.3 54 50.0
Duzib147G0053 Durio zibethinus HOM05D000706 ORTHO05D001554 4.2e-07 58.5 59 45.8
AUR62000570 Chenopodium quinoa HOM05D000706 ORTHO05D001554 5.5e-07 58.2 60 45.0
Manes.17G021800 Manihot esculenta HOM05D000706 ORTHO05D001554 7.1e-07 57.8 54 46.3
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 7.1e-07 57.8 54 50.0
SalBow6G2696 Salvia bowleyana HOM05D000706 ORTHO05D001554 9.3e-07 57.4 108 34.3
TPR.G23221 Trifolium pratense HOM05D000706 ORTHO05D001554 1.2e-06 57.0 58 44.8
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 1.6e-06 56.6 111 32.4
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.6e-06 56.6 130 32.3
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 2.1e-06 56.2 119 33.6
AUR62006923 Chenopodium quinoa HOM05D000706 ORTHO05D001554 2.1e-06 56.2 60 45.0
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 2.1e-06 56.2 124 33.9
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 2.1e-06 56.2 117 32.5
BcaB06g26886 Brassica carinata HOM05D000390 ORTHO05D016042 2.7e-06 55.8 57 47.4
BcaB06g26896 Brassica carinata HOM05D000390 ORTHO05D016042 2.7e-06 55.8 57 47.4
Migut.B01326 Erythranthe guttata HOM05D000706 ORTHO05D001554 2.7e-06 55.8 57 42.1
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 2.7e-06 55.8 128 32.0
Lj2g0014541 Lotus japonicus HOM05D000706 ORTHO05D001554 2.7e-06 55.8 104 31.7
Atru.chr4.14_Atru.chr4.15 Acer truncatum HOM05D000706 ORTHO05D001554 3.5e-06 55.5 110 33.6
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 3.5e-06 55.5 90 34.4
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.5e-06 55.5 128 32.0
Oeu064260.1 Olea europaea HOM05D000706 ORTHO05D001554 3.5e-06 55.5 100 45.0
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 4.6e-06 55.1 118 33.1
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 4.6e-06 55.1 128 31.2
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 4.6e-06 55.1 59 40.7
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 4.6e-06 55.1 59 40.7
Ah.06g188410 Amaranthus hybridus HOM05D000706 ORTHO05D001554 7.9e-06 54.3 61 41.0
HanXRQChr15g0471611 Helianthus annuus HOM05D000706 ORTHO05D001554 7.9e-06 54.3 56 42.9
Prupe.4G286800 Prunus persica HOM05D000706 ORTHO05D001554 7.9e-06 54.3 122 27.9


User provided reference genes

Program Settings