Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 3.6e-132 475.7 412 100.0
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 1.2e-122 444.1 412 88.1
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 3.7e-121 439.1 412 88.1
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 4.9e-121 438.7 412 86.9
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 2.4e-120 436.4 412 86.7
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 3.5e-111 406.0 405 88.4
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 3.5e-111 406.0 405 89.1
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 1.9e-109 400.2 405 87.4
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 3.4e-106 389.4 405 89.4
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 1.9e-101 373.6 405 84.9
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 2.5e-101 373.2 405 85.4
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.5e-101 373.2 405 81.5
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 3.3e-101 372.9 404 83.9
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 1.6e-100 370.5 405 84.7
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 6.2e-100 368.6 405 83.2
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 2.3e-99 366.7 405 80.5
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 5.8e-98 362.1 405 80.2
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 3.3e-93 346.3 405 80.0
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 1.7e-89 334.0 405 74.1
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 3.7e-89 332.8 404 74.3
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 2.4e-88 330.1 405 76.3
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 6.0e-87 325.5 404 81.9
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 7.8e-87 325.1 403 80.1
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 3.9e-86 322.8 403 79.9
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 6.6e-86 322.0 404 76.0
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 1.1e-85 321.2 403 75.4
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 2.5e-85 320.1 406 77.1
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 7.3e-85 318.5 405 72.3
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 2.1e-84 317.0 405 73.1
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 2.1e-84 317.0 406 76.8
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 3.6e-84 316.2 406 74.6
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 3.6e-84 316.2 406 74.6
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 3.6e-84 316.2 406 72.4
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 8.1e-84 315.1 404 80.0
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 1.1e-83 314.7 406 78.1
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 1.1e-83 314.7 399 72.4
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 1.4e-83 314.3 403 73.0
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 1.4e-83 314.3 403 73.0
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 1.8e-83 313.9 406 73.4
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 3.1e-83 313.2 402 72.4
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 6.8e-83 312.0 405 69.6
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 6.8e-83 312.0 402 77.1
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 8.9e-83 311.6 406 76.6
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 2.6e-82 310.1 404 76.5
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 3.4e-82 309.7 402 76.9
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 4.4e-82 309.3 403 72.0
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 1.3e-81 307.8 406 75.6
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 2.9e-81 306.6 404 72.5
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 1.4e-80 304.3 405 75.3
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 3.2e-80 303.1 400 76.5
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 5.4e-80 302.4 404 74.8
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 7.1e-80 302.0 404 74.3
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 1.2e-79 301.2 406 70.9
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 1.6e-79 300.8 467 57.0
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 2.7e-79 300.1 403 67.2
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 4.6e-79 299.3 405 70.9
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 4.6e-79 299.3 407 73.7
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 4.6e-79 299.3 406 70.4
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 4.6e-79 299.3 405 68.9
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 2.3e-78 297.0 405 69.1
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 6.6e-78 295.4 404 73.8
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 2.5e-77 293.5 400 73.2
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 3.3e-77 293.1 405 73.3
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 4.3e-77 292.7 404 71.5
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 4.3e-77 292.7 405 67.4
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.6e-76 290.8 402 74.4
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 1.4e-75 287.7 413 68.8
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 2.4e-75 287.0 397 74.1
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 3.1e-75 286.6 405 72.8
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 2.0e-74 283.9 403 68.5
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 3.4e-74 283.1 401 75.3
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 1.7e-73 280.8 390 71.5
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 1.9e-72 277.3 406 69.0
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 1.6e-71 274.2 401 67.6
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 3.9e-70 269.6 400 70.0
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 2.1e-68 263.8 406 66.7
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 4.8e-68 262.7 407 70.0
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.4e-67 261.2 432 55.8
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 1.2e-66 258.1 402 74.4
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 4.5e-66 256.1 405 66.9
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 9.9e-66 255.0 402 69.4
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 2.1e-63 247.3 403 72.2
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 6.0e-63 245.7 397 71.5
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 3.9e-62 243.0 405 67.9
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 4.3e-61 239.6 408 67.4
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 1.3e-60 238.0 535 48.8
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 1.3e-60 238.0 398 59.5
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.8e-60 236.9 404 72.8
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 1.7e-57 227.6 403 71.5
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 4.9e-57 226.1 404 72.5
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 2.5e-56 223.8 396 72.2
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 3.2e-56 223.4 400 73.8
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 6.0e-55 219.2 412 55.8
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 2.8e-52 210.3 401 69.8
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 5.3e-51 206.1 415 56.9
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 3.2e-48 196.8 177 75.7
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 8.7e-46 188.7 391 69.8
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 6.3e-44 182.6 403 69.5
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 2.4e-43 180.6 403 69.5
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 2.7e-39 167.2 108 71.3
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 2.7e-39 167.2 108 71.3
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 3.3e-37 160.2 399 62.7
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 4.3e-37 159.8 177 59.9
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 1.7e-36 157.9 397 66.8
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 4.1e-35 153.3 174 52.3
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 1.0e-33 148.7 108 63.9
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 1.1e-32 145.2 96 70.8
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 1.9e-32 144.4 154 66.9
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 9.4e-32 142.1 178 52.2
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 3.9e-30 136.7 92 69.6
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 4.4e-29 133.3 107 57.9
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 5.3e-27 126.3 392 41.1
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 1.0e-17 95.5 70 67.1
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 3.5e-10 70.5 63 90.5
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 1.5e-08 65.1 62 88.7
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 4.2e-08 63.5 62 87.1
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 7.2e-08 62.8 62 74.2
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 7.2e-08 62.8 62 79.0
FvH4_3g11250 Fragaria vesca HOM05D002813 ORTHO05D003203 2.3e-06 57.8 110 29.1
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 4.0e-06 57.0 58 50.0


User provided reference genes

Program Settings