Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29845 Brassica carinata HOM05D000812 ORTHO05D017550 7.7e-45 183.3 86 100.0
BraA02t09169Z Brassica rapa HOM05D000812 ORTHO05D000672 3.5e-13 78.2 37 94.6
BolC8t50163H Brassica oleracea HOM05D000812 ORTHO05D017550 4.5e-13 77.8 40 85.0
BcaB07g29844 Brassica carinata HOM05D000812 ORTHO05D000672 1.0e-12 76.6 36 94.4
A02p42380 Brassica napus HOM05D000812 ORTHO05D000672 1.0e-12 76.6 36 94.4
BcaC01g02483 Brassica carinata HOM05D000812 ORTHO05D000672 5.0e-12 74.3 40 77.5
BcaC03g18157 Brassica carinata HOM05D000812 ORTHO05D000672 5.0e-12 74.3 36 91.7
BcaC03g18162 Brassica carinata HOM05D000812 ORTHO05D000672 5.0e-12 74.3 36 91.7
A06p29220 Brassica napus HOM05D000812 ORTHO05D000672 5.0e-12 74.3 40 77.5
C02p62270 Brassica napus HOM05D000812 ORTHO05D000672 5.0e-12 74.3 36 91.7
C03p64310 Brassica napus HOM05D000812 ORTHO05D000672 5.0e-12 74.3 40 77.5
BolC2t12284H Brassica oleracea HOM05D000812 ORTHO05D000672 5.0e-12 74.3 36 91.7
BolC3t18685H Brassica oleracea HOM05D000812 ORTHO05D000672 5.0e-12 74.3 40 77.5
BraA06t25878Z Brassica rapa HOM05D000812 ORTHO05D000672 6.6e-12 73.9 40 77.5
Thhalv10004619m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 6.6e-12 73.9 36 88.9
C08p25420 Brassica napus HOM05D010481 ORTHO05D017550 8.6e-12 73.6 36 88.9
BcaB02g09654 Brassica carinata HOM05D000812 ORTHO05D000672 1.1e-11 73.2 38 78.9
Sp2g25690 Schrenkiella parvula HOM05D000812 ORTHO05D000672 1.1e-11 73.2 36 88.9
AL8G39410 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 7.2e-11 70.5 34 91.2
Carub.0008s2319 Capsella rubella HOM05D000812 ORTHO05D000672 9.5e-11 70.1 34 88.2
CARHR276300 Cardamine hirsuta HOM05D000812 ORTHO05D000672 9.5e-11 70.1 34 88.2
Aa31LG11G1120 Aethionema arabicum HOM05D000812 ORTHO05D000672 1.2e-10 69.7 41 73.2
AT5G62520 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 1.8e-09 65.9 34 85.3
THA.LOC104819437 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 6.8e-09 63.9 37 73.0
AL5G26990 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 8.9e-09 63.5 54 55.6
Thhalv10011103m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 1.2e-08 63.2 32 81.2
AT3G47720 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 2.0e-08 62.4 32 78.1
CARHR156400 Cardamine hirsuta HOM05D000812 ORTHO05D000672 2.0e-08 62.4 38 68.4
Carub.0005s1385 Capsella rubella HOM05D000812 ORTHO05D000672 7.5e-08 60.5 32 75.0
Sp5g14200 Schrenkiella parvula HOM05D000812 ORTHO05D000672 7.5e-08 60.5 31 80.6
Actinidia19097 Actinidia chinensis HOM05D000812 ORTHO05D000672 8.3e-07 57.0 39 53.8
Cfa019133 Carpinus fangiana HOM05D000812 ORTHO05D000672 8.3e-07 57.0 32 71.9
Haze_07472 Corylus avellana HOM05D000812 ORTHO05D000672 8.3e-07 57.0 32 71.9
Dinv20653 Davidia involucrata HOM05D000812 ORTHO05D000672 8.3e-07 57.0 40 55.0
Cpa.g.sc76.55 Carica papaya HOM05D000812 ORTHO05D000672 1.1e-06 56.6 32 65.6
CiPaw.11G026200 Carya illinoinensis HOM05D000812 ORTHO05D000672 1.4e-06 56.2 33 69.7
Dinv02892 Davidia involucrata HOM05D000812 ORTHO05D000672 1.4e-06 56.2 32 65.6
CSS0017926 Camellia sinensis var. sinensis HOM05D000812 ORTHO05D000672 1.8e-06 55.8 32 65.6
CiPaw.12G026600 Carya illinoinensis HOM05D000812 ORTHO05D000672 1.8e-06 55.8 32 71.9
Lj9A449T43 Lonicera japonica HOM05D000812 ORTHO05D000672 2.4e-06 55.5 38 52.6
Thecc.03G012700 Theobroma cacao HOM05D000812 ORTHO05D000672 2.4e-06 55.5 32 65.6
GSVIVG01007754001 Vitis vinifera HOM05D000812 ORTHO05D000672 2.4e-06 55.5 32 68.8
FvH4_5g05320 Fragaria vesca HOM05D000812 ORTHO05D000672 3.1e-06 55.1 32 65.6
FAN18G0809 Fragaria x ananassa HOM05D000812 ORTHO05D000672 3.1e-06 55.1 32 65.6
FAN18G1988 Fragaria x ananassa HOM05D000812 ORTHO05D000672 3.1e-06 55.1 32 65.6
Thecc.02G251100 Theobroma cacao HOM05D000812 ORTHO05D000672 3.1e-06 55.1 38 57.9
vmacro16609 Vaccinium macrocarpon HOM05D000812 ORTHO05D000672 3.1e-06 55.1 39 53.8
Eucgr.B00305 Eucalyptus grandis HOM05D000812 ORTHO05D000672 4.1e-06 54.7 32 68.8
Oeu035994.2 Olea europaea HOM05D000812 ORTHO05D000672 4.1e-06 54.7 39 56.4
PGR083G1086 Punica granatum HOM05D000812 ORTHO05D000672 4.1e-06 54.7 32 68.8
ClCG01G013140 Citrullus lanatus HOM05D000812 ORTHO05D000672 5.4e-06 54.3 31 67.7
Potri.012G081100 Populus trichocarpa HOM05D000812 ORTHO05D000672 5.4e-06 54.3 32 62.5
Ciclev10020868m.g Citrus clementina HOM05D000812 ORTHO05D000672 7.0e-06 53.9 32 62.5
FAN04G1163 Fragaria x ananassa HOM05D000812 ORTHO05D000672 7.0e-06 53.9 32 65.6
FAN08G1864 Fragaria x ananassa HOM05D000812 ORTHO05D000672 7.0e-06 53.9 32 65.6
QL10p011650 Quercus lobata HOM05D000812 ORTHO05D000672 7.0e-06 53.9 32 65.6
RcHm_v2.0_Chr7g0193541 Rosa chinensis HOM05D000812 ORTHO05D000672 7.0e-06 53.9 32 65.6
Sabra15G0101600 Salix brachista HOM05D000812 ORTHO05D000672 7.0e-06 53.9 34 58.8
COL.COLO4_30038 Corchorus olitorius HOM05D000812 ORTHO05D000672 9.2e-06 53.5 32 62.5
ECA232G4399 Erigeron canadensis HOM05D000812 ORTHO05D000672 9.2e-06 53.5 39 53.8
MD06G1173800 Malus domestica HOM05D000812 ORTHO05D000672 9.2e-06 53.5 32 59.4
Nn3g16865 Nelumbo nucifera HOM05D000812 ORTHO05D000672 9.2e-06 53.5 32 62.5
Rhsim08G0172100 Rhododendron simsii HOM05D000812 ORTHO05D000672 9.2e-06 53.5 39 53.8


User provided reference genes

Program Settings