Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 3.2e-197 691.8 419 100.0
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 8.6e-174 614.0 417 91.1
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 8.6e-174 614.0 417 92.6
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 3.3e-173 612.1 417 92.3
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 3.3e-173 612.1 426 85.9
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 4.7e-172 608.2 421 90.3
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 4.0e-171 605.1 421 88.1
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 6.8e-171 604.4 421 83.6
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 6.8e-171 604.4 421 91.2
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 3.4e-170 602.1 425 84.2
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 3.4e-170 602.1 425 84.2
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 3.7e-169 598.6 425 82.8
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 3.7e-169 598.6 425 82.8
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 8.3e-161 570.9 423 79.4
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.4e-160 570.1 417 82.3
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 8.6e-158 560.8 417 85.1
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 1.1e-157 560.5 411 82.2
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 1.1e-155 553.9 423 84.9
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 1.6e-151 540.0 421 75.3
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.7e-134 483.4 424 72.9
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.7e-129 466.8 394 72.6
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 2.7e-127 459.5 408 62.3
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.3e-126 457.2 407 67.8
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 1.1e-125 454.1 401 60.6
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 1.5e-125 453.8 405 68.6
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 1.5e-125 453.8 410 58.3
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 1.5e-125 453.8 405 68.9
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.9e-125 453.4 405 67.7
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 1.9e-125 453.4 408 60.0
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 2.5e-125 453.0 408 60.0
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 1.3e-124 450.7 401 59.6
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 1.3e-124 450.7 399 68.2
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.3e-124 450.7 411 73.0
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 1.3e-124 450.7 408 66.2
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.3e-124 450.7 410 68.0
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 1.6e-124 450.3 402 67.2
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 2.1e-124 449.9 407 68.3
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 2.8e-124 449.5 410 67.6
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 3.7e-124 449.1 403 61.5
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.1e-123 447.6 410 68.5
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.8e-123 446.8 393 67.9
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 3.1e-123 446.0 421 62.9
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 4.0e-123 445.7 407 59.7
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 5.3e-123 445.3 424 68.4
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 6.9e-123 444.9 409 67.2
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 6.9e-123 444.9 418 61.5
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 6.9e-123 444.9 409 71.6
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.5e-122 443.7 422 67.1
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 2.0e-122 443.4 414 57.5
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 4.5e-122 442.2 405 61.7
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 1.3e-121 440.7 416 66.6
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 2.2e-121 439.9 417 68.1
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 2.9e-121 439.5 402 69.2
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 3.8e-121 439.1 404 66.6
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 3.8e-121 439.1 436 63.1
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 3.8e-121 439.1 398 67.1
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 4.9e-121 438.7 371 61.5
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 6.4e-121 438.3 411 59.9
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 1.1e-120 437.6 413 67.6
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.4e-120 437.2 411 68.1
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.4e-120 437.2 405 65.7
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.9e-120 436.8 392 72.2
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 1.9e-120 436.8 411 70.6
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 3.2e-120 436.0 430 55.6
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 1.6e-119 433.7 401 65.8
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 1.3e-118 430.6 426 65.7
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 2.3e-118 429.9 399 66.2
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 2.3e-118 429.9 409 67.0
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 2.3e-118 429.9 408 60.0
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 3.9e-118 429.1 408 55.4
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 3.9e-118 429.1 410 65.6
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 6.7e-118 428.3 421 63.4
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 6.7e-118 428.3 424 59.2
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 1.5e-117 427.2 392 67.1
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 2.5e-117 426.4 398 64.8
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 7.4e-117 424.9 411 63.7
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 1.3e-116 424.1 398 65.1
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 2.8e-116 422.9 350 71.7
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 4.8e-116 422.2 411 58.4
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.8e-115 420.2 405 54.8
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 1.8e-115 420.2 397 66.8
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 2.4e-115 419.9 442 53.4
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 4.0e-115 419.1 405 54.8
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 6.5e-113 411.8 349 70.2
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.5e-112 409.8 419 63.2
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 3.2e-112 409.5 412 60.0
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 5.5e-112 408.7 417 63.3
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 7.1e-112 408.3 347 68.9
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.3e-112 407.9 408 60.3
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 2.1e-111 406.8 353 62.9
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.1e-111 406.8 415 62.7
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 4.6e-111 405.6 353 61.2
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.0e-110 404.4 365 68.8
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 3.9e-110 402.5 354 63.3
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 1.1e-109 401.0 397 65.5
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.6e-108 397.1 381 63.8
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.2e-108 396.7 355 57.7
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.2e-106 391.0 358 64.8
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 5.0e-105 385.6 399 59.6
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 2.7e-103 379.8 349 66.8
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 7.9e-103 378.3 401 54.6
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 1.0e-102 377.9 396 54.0
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 1.0e-102 377.9 412 59.2
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.8e-102 377.1 412 59.0
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 5.1e-102 375.6 348 64.4
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.9e-101 373.6 382 54.7
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 2.5e-101 373.2 315 66.7
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 5.7e-101 372.1 407 59.0
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.7e-101 372.1 407 59.2
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 3.7e-100 369.4 319 73.0
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 6.3e-100 368.6 355 54.9
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.1e-99 367.9 409 56.7
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.9e-97 359.8 427 55.3
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 1.4e-94 350.9 346 61.8
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 3.0e-94 349.7 353 56.1
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 5.1e-94 349.0 366 60.7
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 5.0e-89 332.4 334 59.3
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 2.6e-85 320.1 176 83.5
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.3e-84 317.8 383 46.7
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 7.7e-82 308.5 332 50.0
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 2.9e-81 306.6 160 86.2
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.8e-81 306.2 355 48.2
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 3.8e-81 306.2 363 47.1
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 5.0e-81 305.8 355 48.2
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.7e-76 290.8 348 46.6
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 7.7e-74 282.0 331 46.8
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 1.3e-73 281.2 303 62.7
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 1.0e-62 245.0 132 84.1
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 1.3e-60 238.0 289 62.3
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 2.2e-60 237.3 295 60.7
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 9.5e-56 221.9 119 84.0
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 1.3e-52 211.5 299 57.9
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-51 208.0 111 83.8
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 8.0e-47 192.2 113 74.3
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.6e-45 187.2 169 55.0
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 1.9e-40 171.0 92 82.6
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 9.5e-40 168.7 292 41.8
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 1.6e-39 167.9 338 33.7
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 5.6e-32 142.9 167 50.9
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.3e-25 121.7 280 31.4
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 5.1e-25 119.8 157 45.9
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.2e-22 109.8 66 77.3
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 2.0e-13 81.3 39 92.3
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 2.6e-13 80.9 68 55.9


User provided reference genes

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