Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 9.1e-213 743.4 406 100.0
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.7e-163 579.7 414 81.2
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 2.5e-162 575.9 413 80.9
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 4.3e-162 575.1 414 80.9
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 1.6e-161 573.2 411 80.3
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 2.1e-161 572.8 409 80.7
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.8e-144 516.5 421 71.7
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 5.2e-144 515.0 420 71.0
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 1.1e-141 507.3 418 70.8
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 7.6e-135 484.6 359 75.2
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 6.0e-132 474.9 414 67.4
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 5.1e-131 471.9 419 67.5
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 9.3e-125 451.1 450 62.0
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.2e-108 397.5 408 57.8
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 2.8e-97 359.8 426 51.2
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 1.4e-96 357.5 431 50.1
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.5e-95 352.8 426 50.0
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 5.9e-95 352.1 429 49.4
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 1.1e-93 347.8 423 48.9
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 1.4e-93 347.4 429 48.7
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 7.2e-93 345.1 343 54.2
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 1.6e-92 344.0 429 49.2
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 4.4e-90 335.9 429 48.0
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 9.7e-90 334.7 419 47.5
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 2.8e-89 333.2 347 53.0
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 4.8e-89 332.4 365 51.2
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 8.2e-89 331.6 389 49.9
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.1e-88 331.3 428 46.5
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 2.4e-88 330.1 367 50.7
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 2.4e-88 330.1 438 45.7
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 3.1e-88 329.7 428 47.0
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 4.1e-88 329.3 424 47.9
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 4.1e-88 329.3 424 47.4
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 5.3e-88 328.9 397 49.6
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 1.2e-87 327.8 433 47.3
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.6e-87 326.6 397 49.4
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 3.5e-87 326.2 433 46.7
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 4.5e-87 325.9 422 48.3
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 1.3e-86 324.3 432 45.4
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.3e-86 324.3 429 47.8
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 3.8e-86 322.8 393 48.9
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 3.8e-86 322.8 420 45.2
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 5.0e-86 322.4 432 44.9
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 8.5e-86 321.6 426 46.2
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.9e-85 320.5 430 47.4
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 3.2e-85 319.7 432 44.7
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.6e-84 316.2 433 46.0
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 8.0e-84 315.1 421 46.6
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.0e-83 314.7 381 49.3
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.0e-83 314.7 437 44.9
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 1.0e-83 314.7 426 45.8
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 3.0e-83 313.2 427 46.6
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 5.2e-83 312.4 420 45.7
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 2.6e-82 310.1 375 47.5
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 4.4e-82 309.3 421 43.9
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 4.4e-82 309.3 432 44.9
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 5.7e-82 308.9 415 44.6
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.7e-81 307.4 422 46.2
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 2.2e-81 307.0 370 50.0
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 6.3e-81 305.4 423 44.7
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.4e-80 304.3 418 43.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 5.3e-80 302.4 482 43.4
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 5.3e-80 302.4 461 42.7
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 7.0e-80 302.0 397 45.3
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 7.0e-80 302.0 439 42.6
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 9.1e-80 301.6 356 48.0
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 3.5e-79 299.7 415 45.8
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.5e-79 299.7 427 43.8
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.3e-78 297.7 327 51.4
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.2e-78 297.0 422 44.1
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 2.2e-78 297.0 373 46.9
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 3.2e-77 293.1 373 47.5
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 2.7e-76 290.0 417 43.2
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 2.7e-76 290.0 420 44.8
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 8.0e-76 288.5 427 41.9
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 6.8e-75 285.4 426 45.1
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 2.0e-74 283.9 379 45.1
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 7.5e-74 282.0 213 77.5
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 7.5e-74 282.0 425 43.5
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 4.8e-73 279.3 472 40.0
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 1.4e-72 277.7 414 41.8
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 4.1e-72 276.2 393 45.5
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 2.3e-70 270.4 389 45.8
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 2.5e-69 266.9 420 40.5
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 4.2e-69 266.2 420 43.1
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 1.2e-68 264.6 424 43.4
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 1.6e-68 264.2 404 42.3
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 6.1e-68 262.3 344 45.9
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 6.1e-68 262.3 338 46.4
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 1.8e-67 260.8 409 41.1
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.5e-61 240.4 427 40.3
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 5.6e-61 239.2 253 53.8
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 1.6e-60 237.7 424 39.2
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 3.4e-58 229.9 267 48.3
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 5.4e-56 222.6 324 40.7
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 9.5e-53 211.8 429 37.3
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 6.2e-52 209.1 342 38.6
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.1e-51 208.4 207 51.7
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 2.2e-49 200.7 196 53.1
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 1.1e-48 198.4 326 38.7
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 2.6e-42 177.2 174 51.1
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 1.1e-37 161.8 328 36.3
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 9.5e-37 158.7 277 34.7
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 3.1e-35 153.7 302 33.1
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 6.9e-27 125.9 137 48.9
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.6e-26 122.5 147 46.9
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.6e-26 122.5 115 53.9
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 9.9e-26 122.1 115 53.9
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.1e-24 118.6 150 45.3
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-23 114.8 132 48.5
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 8.7e-22 109.0 174 40.2
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 2.8e-20 104.0 219 34.7
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 1.2e-18 98.6 154 43.5
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-18 98.2 90 53.3
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 4.6e-15 86.7 204 34.3
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 2.8e-12 77.4 319 25.7
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 8.1e-12 75.9 225 27.6
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 6.9e-11 72.8 72 47.2
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-10 72.0 74 44.6
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 3.4e-10 70.5 81 48.1
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 7.6e-10 69.3 64 50.0
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 1.1e-08 65.5 80 45.0
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.0e-07 59.7 139 33.8


User provided reference genes

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