Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 1.6e-132 476.1 242 100.0
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 6.1e-124 447.6 242 94.6
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 1.8e-123 446.0 242 94.2
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 3.0e-123 445.3 242 93.8
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 3.0e-123 445.3 242 93.8
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 1.6e-108 396.4 239 84.5
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 8.3e-105 384.0 238 81.9
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 2.8e-100 369.0 238 79.4
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 8.1e-100 367.5 241 78.4
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 2.6e-98 362.5 240 78.3
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 7.8e-95 350.9 241 77.2
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 3.5e-71 272.3 234 65.0
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 1.0e-65 254.2 222 59.0
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 1.3e-65 253.8 220 60.9
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 4.9e-65 251.9 220 60.5
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 6.5e-65 251.5 226 57.1
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 1.1e-64 250.8 233 58.8
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 7.1e-64 248.1 245 57.1
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 7.1e-64 248.1 227 59.0
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 1.2e-63 247.3 199 62.3
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 1.6e-63 246.9 228 57.9
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 2.1e-63 246.5 213 61.5
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 2.7e-63 246.1 224 60.3
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 4.6e-63 245.4 232 57.8
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 6.0e-63 245.0 217 57.6
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 7.9e-63 244.6 233 55.4
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 3.0e-62 242.7 209 59.3
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 3.0e-62 242.7 222 59.0
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 5.1e-62 241.9 227 56.4
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 8.7e-62 241.1 209 58.9
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 8.7e-62 241.1 217 58.5
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 1.1e-61 240.7 222 56.8
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 1.1e-61 240.7 219 56.6
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 1.9e-61 240.0 209 58.9
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 3.3e-61 239.2 223 56.5
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 5.7e-61 238.4 222 56.8
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 5.7e-61 238.4 195 61.5
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 7.4e-61 238.0 244 52.5
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 7.4e-61 238.0 196 61.7
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 1.6e-60 236.9 237 54.4
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 1.6e-60 236.9 231 55.8
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 2.1e-60 236.5 231 53.7
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 2.1e-60 236.5 223 56.5
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 2.8e-60 236.1 233 54.5
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 3.7e-60 235.7 217 57.1
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 1.1e-59 234.2 224 55.8
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 1.8e-59 233.4 199 59.8
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.8e-59 233.4 209 56.5
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 1.8e-59 233.4 203 58.6
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 2.4e-59 233.0 219 56.6
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 6.9e-59 231.5 196 60.7
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 9.0e-59 231.1 191 61.3
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 9.0e-59 231.1 198 60.6
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.2e-58 230.7 209 56.5
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 1.5e-58 230.3 211 56.9
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 1.5e-58 230.3 196 60.2
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 1.5e-58 230.3 217 55.8
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.0e-58 229.9 237 52.3
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 5.8e-58 228.4 237 52.3
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 7.6e-58 228.0 219 54.8
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 1.0e-57 227.6 219 53.4
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 1.0e-57 227.6 227 55.1
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.3e-57 227.3 241 51.5
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 1.3e-57 227.3 232 56.0
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 1.7e-57 226.9 205 57.6
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 2.9e-57 226.1 237 51.9
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 3.8e-57 225.7 217 54.8
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 5.0e-57 225.3 217 55.8
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.1e-56 224.2 209 56.5
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 1.1e-56 224.2 197 56.9
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 1.4e-56 223.8 245 51.0
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 4.2e-56 222.2 235 51.5
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 5.5e-56 221.9 235 50.6
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 9.3e-56 221.1 215 56.7
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 9.3e-56 221.1 214 55.1
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 1.2e-55 220.7 218 55.0
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 1.2e-55 220.7 236 49.6
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 1.6e-55 220.3 213 54.9
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 1.6e-55 220.3 232 53.4
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 1.6e-55 220.3 218 53.7
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 2.1e-55 219.9 245 48.6
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 2.3e-54 216.5 205 55.6
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 6.7e-54 214.9 218 52.3
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 6.7e-54 214.9 227 55.1
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 1.1e-53 214.2 189 57.7
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 5.7e-53 211.8 190 57.4
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 3.7e-52 209.1 188 56.4
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.8e-51 206.8 235 51.9
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 2.4e-51 206.5 195 54.9
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 9.0e-51 204.5 196 57.1
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 2.6e-50 203.0 191 53.4
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 4.6e-47 192.2 185 53.0
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 5.1e-46 188.7 184 53.3
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 8.8e-46 188.0 204 48.5
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 8.8e-46 188.0 140 63.6
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 7.4e-45 184.9 142 63.4
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 2.6e-42 176.4 187 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 2.7e-39 166.4 173 48.0
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 6.1e-39 165.2 230 43.0
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 6.7e-38 161.8 200 43.5
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 6.7e-38 161.8 206 46.6
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 5.7e-37 158.7 220 43.6
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 1.3e-36 157.5 173 48.6
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 1.3e-36 157.5 187 48.1
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 6.5e-33 145.2 218 39.0
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 5.0e-25 119.0 168 39.9
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 6.5e-25 118.6 180 41.1
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.5e-24 117.5 179 41.9
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 1.5e-24 117.5 89 64.0
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 3.0e-22 109.8 65 78.5
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 4.4e-21 105.9 107 48.6
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 1.6e-18 97.4 83 55.4
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 3.8e-17 92.8 152 42.1
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 3.7e-12 76.3 103 38.8
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 1.4e-11 74.3 135 31.9
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 1.8e-11 73.9 57 64.9
BraA06t25829Z Brassica rapa HOM05D014866 ORTHO05D022047 2.4e-11 73.6 107 44.9
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 2.4e-11 73.6 78 50.0
C03p64800 Brassica napus HOM05D014866 ORTHO05D022047 2.0e-10 70.5 53 64.2
BolC3t18743H Brassica oleracea HOM05D014866 ORTHO05D022047 2.0e-10 70.5 53 64.2
arahy.Tifrunner.gnm1.ann1.3M52EB Arachis hypogaea HOM05D007174 ORTHO05D010441 8.9e-06 55.1 38 57.9


User provided reference genes

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