Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 5.6e-144 514.2 254 100.0
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 8.7e-129 463.8 240 97.5
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 9.6e-128 460.3 240 96.2
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 1.2e-122 443.4 231 96.5
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 6.0e-122 441.0 231 95.7
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 3.4e-117 425.2 232 91.8
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 4.6e-114 414.8 240 87.1
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 4.6e-114 414.8 240 87.1
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 6.0e-114 414.5 231 90.5
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 1.0e-113 413.7 241 87.6
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 9.6e-112 407.1 231 90.0
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 6.1e-98 361.3 257 75.5
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 3.9e-97 358.6 236 77.1
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.1e-96 357.1 238 75.6
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 2.0e-96 356.3 238 76.5
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 2.5e-96 355.9 262 74.8
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 9.7e-96 354.0 234 79.1
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 1.7e-95 353.2 238 76.1
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 3.1e-94 349.0 239 76.6
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 2.5e-91 339.3 245 70.6
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 7.2e-91 337.8 213 78.4
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 7.9e-90 334.3 245 70.2
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 1.0e-89 334.0 212 77.8
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 1.0e-89 334.0 212 77.8
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 5.1e-89 331.6 247 69.2
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 6.7e-89 331.3 212 76.9
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 6.7e-89 331.3 210 78.1
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 6.7e-89 331.3 188 85.6
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 8.8e-89 330.9 209 78.0
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 1.1e-88 330.5 249 70.7
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 2.0e-88 329.7 230 71.7
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 2.0e-88 329.7 241 70.5
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 2.0e-88 329.7 213 76.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.6e-88 329.3 195 82.6
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 2.6e-88 329.3 210 78.6
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 2.6e-88 329.3 242 69.8
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 3.3e-88 328.9 236 72.5
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 3.3e-88 328.9 210 77.1
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 3.3e-88 328.9 209 77.0
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 5.7e-88 328.2 209 78.5
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 5.7e-88 328.2 219 74.0
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 5.7e-88 328.2 196 82.7
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 5.7e-88 328.2 244 69.3
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 5.7e-88 328.2 232 71.1
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 9.7e-88 327.4 245 69.0
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 9.7e-88 327.4 210 75.2
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 9.7e-88 327.4 210 75.7
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 1.3e-87 327.0 210 77.1
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.3e-87 327.0 236 71.6
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.7e-87 326.6 221 73.3
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 1.7e-87 326.6 212 78.3
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 1.7e-87 326.6 210 77.6
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 2.2e-87 326.2 225 72.4
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 2.8e-87 325.9 210 76.2
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 2.8e-87 325.9 221 72.9
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 3.7e-87 325.5 209 78.0
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 3.7e-87 325.5 212 77.8
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 3.7e-87 325.5 211 76.8
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 4.8e-87 325.1 209 76.6
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 4.8e-87 325.1 210 75.7
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 6.3e-87 324.7 245 68.6
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 6.3e-87 324.7 235 70.6
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 8.2e-87 324.3 210 76.7
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 8.2e-87 324.3 219 73.5
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.1e-86 323.9 242 69.8
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 1.4e-86 323.6 212 77.8
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 1.8e-86 323.2 213 75.1
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 3.1e-86 322.4 211 76.3
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 5.3e-86 321.6 210 75.7
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 7.0e-86 321.2 196 80.1
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 7.0e-86 321.2 188 80.9
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.0e-85 319.7 210 75.2
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 3.5e-85 318.9 190 82.1
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 5.9e-85 318.2 252 67.9
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 5.9e-85 318.2 209 74.2
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 5.9e-85 318.2 217 72.8
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 7.7e-85 317.8 198 79.8
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.0e-84 317.4 228 69.7
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 1.7e-84 316.6 219 74.0
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.7e-84 316.6 196 77.6
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.2e-84 316.2 210 74.8
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 2.2e-84 316.2 190 82.1
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 5.0e-84 315.1 236 67.8
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 1.1e-83 313.9 254 65.7
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.5e-83 313.5 189 79.9
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 1.5e-83 313.5 193 78.8
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.5e-83 313.5 258 66.7
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.5e-83 313.5 213 73.7
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 3.2e-83 312.4 202 77.2
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 2.1e-82 309.7 187 80.7
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 3.6e-82 308.9 196 74.5
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 1.5e-80 303.5 194 74.2
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 2.0e-80 303.1 216 71.3
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 1.1e-78 297.4 191 76.4
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 2.4e-78 296.2 210 71.4
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 9.1e-78 294.3 196 70.9
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 5.0e-76 288.5 188 71.8
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 5.5e-75 285.0 260 60.4
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 3.4e-72 275.8 189 68.8
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 1.7e-71 273.5 209 66.5
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 4.8e-71 271.9 179 75.4
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 1.1e-70 270.8 220 64.1
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 5.4e-70 268.5 199 69.3
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 7.0e-70 268.1 190 67.9
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 1.0e-68 264.2 188 66.5
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 2.9e-68 262.7 190 70.5
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 1.4e-65 253.8 183 66.7
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.8e-65 253.4 245 57.6
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 3.5e-61 239.2 196 60.7
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.9e-59 233.4 144 79.2
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.5e-48 197.2 192 50.5
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 3.3e-43 179.5 210 47.1
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 4.1e-38 162.5 99 78.8
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.4e-33 147.5 102 69.6
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 2.0e-32 143.7 207 40.6
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 5.2e-25 119.0 78 71.8
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 4.2e-22 109.4 81 69.1
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.1e-19 101.3 55 83.6
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 2.8e-18 96.7 74 59.5
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 6.2e-18 95.5 74 58.1
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 1.7e-15 87.4 46 84.8
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.4e-14 83.6 44 81.8
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 7.1e-14 82.0 47 76.6
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.9e-12 76.3 77 59.7
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 6.2e-10 68.9 115 41.7
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 7.6e-08 62.0 30 90.0
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 3.2e-06 56.6 36 63.9


User provided reference genes

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