Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 2.3e-140 502.3 269 100.0
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.4e-31 141.0 98 77.6
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 8.6e-26 121.7 100 71.0
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 8.6e-26 121.7 100 71.0
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 8.6e-26 121.7 100 71.0
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.9e-25 120.6 100 70.0
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 2.5e-25 120.2 100 70.0
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 4.3e-25 119.4 100 70.0
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 9.5e-25 118.2 100 69.0
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.2e-24 117.9 100 69.0
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.6e-24 117.5 100 69.0
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 2.8e-24 116.7 100 68.0
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 6.1e-24 115.5 100 67.0
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 6.1e-24 115.5 100 67.0
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.3e-23 113.6 80 78.8
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 3.0e-23 113.2 100 65.0
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 4.4e-22 109.4 100 63.0
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 5.7e-22 109.0 100 62.0
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 7.5e-22 108.6 100 62.0
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 9.8e-22 108.2 100 60.0
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 2.9e-21 106.7 101 62.4
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 4.9e-21 105.9 100 59.0
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 4.9e-21 105.9 101 59.4
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 4.9e-21 105.9 100 60.0
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 4.9e-21 105.9 100 60.0
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 6.4e-21 105.5 100 60.0
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 6.4e-21 105.5 100 60.0
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 8.3e-21 105.1 100 58.0
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 1.1e-20 104.8 100 60.0
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.1e-20 104.8 100 59.0
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.1e-20 104.8 100 59.0
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.4e-20 104.4 100 57.0
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 1.4e-20 104.4 100 60.0
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.8e-20 104.0 101 59.4
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 2.4e-20 103.6 100 59.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 2.4e-20 103.6 100 59.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.4e-20 103.6 100 58.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 4.1e-20 102.8 100 57.0
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 4.1e-20 102.8 100 57.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 4.1e-20 102.8 100 57.0
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 4.1e-20 102.8 100 57.0
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 4.1e-20 102.8 100 58.0
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 5.4e-20 102.4 100 60.0
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 5.4e-20 102.4 100 57.0
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 58.0
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 57.0
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 59.0
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 57.0
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 57.0
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 57.0
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 61.0
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 61.0
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 7.0e-20 102.1 100 57.0
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 9.2e-20 101.7 100 60.0
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 9.2e-20 101.7 100 60.0
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 1.2e-19 101.3 100 56.0
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.2e-19 101.3 100 57.0
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.2e-19 101.3 100 57.0
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 1.2e-19 101.3 100 57.0
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.2e-19 101.3 100 57.0
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.6e-19 100.9 100 56.0
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.0e-19 100.5 100 60.0
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 2.7e-19 100.1 100 60.0
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.7e-19 100.1 100 60.0
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 2.7e-19 100.1 80 67.5
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 2.7e-19 100.1 100 56.0
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 3.5e-19 99.8 80 65.0
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 3.5e-19 99.8 80 68.8
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 3.5e-19 99.8 100 56.0
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 3.5e-19 99.8 100 56.0
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 4.6e-19 99.4 101 56.4
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 4.6e-19 99.4 100 56.0
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 5.9e-19 99.0 100 57.0
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 7.8e-19 98.6 81 64.2
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 7.8e-19 98.6 100 57.0
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 1.3e-18 97.8 79 63.3
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 1.7e-18 97.4 79 64.6
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 2.3e-18 97.1 82 63.4
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.3e-18 97.1 81 63.0
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 3.0e-18 96.7 100 54.0
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 3.0e-18 96.7 100 53.0
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 5.0e-18 95.9 100 55.0
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 6.6e-18 95.5 93 59.1
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 8.6e-18 95.1 80 62.5
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 8.6e-18 95.1 80 65.0
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 1.1e-17 94.7 80 63.8
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.1e-17 94.7 79 57.0
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 2.5e-17 93.6 80 61.2
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 3.3e-17 93.2 104 54.8
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 3.3e-17 93.2 100 51.0
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 3.3e-17 93.2 100 54.0
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 4.3e-17 92.8 94 57.4
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 5.6e-17 92.4 101 53.5
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 5.6e-17 92.4 80 61.2
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 1.6e-16 90.9 86 58.1
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 1.6e-16 90.9 100 51.0
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.8e-16 90.1 80 58.8
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 4.7e-16 89.4 80 58.8
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 8.0e-16 88.6 80 62.5
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.1e-15 88.2 78 57.7
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 3.1e-15 86.7 80 61.2
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 3.1e-15 86.7 80 57.5
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 8.9e-15 85.1 80 57.5
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.5e-14 84.3 94 52.1
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 7.5e-14 82.0 80 55.0
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 1.3e-13 81.3 77 54.5
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 6.4e-13 79.0 70 57.1
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 1.0e-10 71.6 87 48.3
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 3.9e-10 69.7 32 100.0
BcaB06g29628 Brassica carinata HOM05D000380 ORTHO05D001949 5.0e-10 69.3 83 51.8
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 3.3e-09 66.6 80 43.8
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 5.6e-09 65.9 71 50.7
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 5.6e-09 65.9 71 50.7
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 9.5e-09 65.1 82 47.6
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 4.7e-08 62.8 46 65.2
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 1.4e-07 61.2 81 43.2
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 9.9e-06 55.1 51 60.8


User provided reference genes

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