Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.7e-67 258.5 126 100.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 7.5e-49 197.2 154 73.4
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 2.6e-17 92.4 59 83.1
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-13 79.7 51 84.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.6e-11 73.2 56 66.1
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.1e-11 72.8 56 67.9
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.6e-11 72.0 56 67.9
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.8e-11 71.6 56 66.1
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 4.8e-11 71.6 56 66.1
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 4.8e-11 71.6 56 66.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 4.8e-11 71.6 56 66.1
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 4.8e-11 71.6 56 66.1
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 4.8e-11 71.6 56 66.1
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 4.8e-11 71.6 56 66.1
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 6.2e-11 71.2 56 66.1
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 8.1e-11 70.9 56 64.3
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 8.1e-11 70.9 52 67.3
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.8e-10 69.7 56 64.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 3.1e-10 68.9 56 66.1
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 1.2e-09 67.0 56 64.3
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 3.4e-09 65.5 56 62.5
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 4.5e-09 65.1 56 62.5
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 4.5e-09 65.1 56 57.1
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 5.8e-09 64.7 56 57.1
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 7.6e-09 64.3 56 60.7
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 7.6e-09 64.3 56 60.7
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.7e-08 63.2 56 53.6
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.2e-08 62.8 56 50.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 2.2e-08 62.8 56 55.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 3.8e-08 62.0 56 55.4
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.8e-08 62.0 56 55.4
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 4.9e-08 61.6 56 55.4
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 6.4e-08 61.2 56 50.0
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 8.4e-08 60.8 56 53.6
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.1e-07 60.5 56 53.6
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.1e-07 60.5 56 48.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.1e-07 60.5 56 51.8
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 1.1e-07 60.5 56 50.0
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.1e-07 60.5 56 53.6
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 1.9e-07 59.7 56 53.6
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 2.4e-07 59.3 56 51.8
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.2e-07 58.9 56 48.2
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 3.2e-07 58.9 56 48.2
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 3.2e-07 58.9 56 50.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 3.2e-07 58.9 56 51.8
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 4.2e-07 58.5 56 50.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 4.2e-07 58.5 56 50.0
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 4.2e-07 58.5 52 51.9
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.2e-07 58.5 56 50.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 4.2e-07 58.5 56 53.6
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 4.2e-07 58.5 56 50.0
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 4.2e-07 58.5 82 41.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 5.5e-07 58.2 56 50.0
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 7.1e-07 57.8 56 51.8
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 7.1e-07 57.8 46 58.7
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 7.1e-07 57.8 72 40.3
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 7.1e-07 57.8 56 53.6
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 9.3e-07 57.4 56 51.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 9.3e-07 57.4 56 48.2
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 9.3e-07 57.4 56 46.4
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 9.3e-07 57.4 81 39.5
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 9.3e-07 57.4 56 51.8
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 9.3e-07 57.4 56 46.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.2e-06 57.0 56 46.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 1.2e-06 57.0 56 50.0
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.2e-06 57.0 56 50.0
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 1.2e-06 57.0 56 48.2
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.2e-06 57.0 56 50.0
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.2e-06 57.0 56 48.2
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.2e-06 57.0 56 50.0
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.6e-06 56.6 56 44.6
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-06 56.6 72 40.3
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-06 56.6 72 40.3
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.6e-06 56.6 56 50.0
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.6e-06 56.6 56 44.6
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.1e-06 56.2 56 51.8
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 2.1e-06 56.2 56 50.0
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.1e-06 56.2 81 38.3
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.7e-06 55.8 56 46.4
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 2.7e-06 55.8 56 48.2
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.7e-06 55.8 56 50.0
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.7e-06 55.8 56 50.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.7e-06 55.8 56 50.0
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 2.7e-06 55.8 56 48.2
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 2.7e-06 55.8 56 48.2
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 3.5e-06 55.5 56 48.2
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.5e-06 55.5 56 48.2
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 3.5e-06 55.5 56 50.0
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 3.5e-06 55.5 56 46.4
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.6e-06 55.1 56 48.2
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 4.6e-06 55.1 56 46.4
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 6.0e-06 54.7 56 50.0
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.0e-06 54.7 56 46.4
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 6.0e-06 54.7 50 54.0
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 6.0e-06 54.7 48 54.2
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 7.9e-06 54.3 56 46.4
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 7.9e-06 54.3 56 46.4
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 7.9e-06 54.3 56 46.4
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 7.9e-06 54.3 68 42.6
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 7.9e-06 54.3 50 50.0
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.9e-06 54.3 56 44.6


User provided reference genes

Program Settings