Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 8.0e-29 129.8 68 100.0
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 2.5e-22 108.2 58 96.6
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 2.5e-22 108.2 58 96.6
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 1.0e-20 102.8 60 88.3
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 1.4e-20 102.4 55 90.9
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 1.4e-20 102.4 55 90.9
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.4e-20 102.4 55 90.9
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 1.2e-19 99.4 60 83.3
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 1.5e-19 99.0 53 90.6
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 2.0e-19 98.6 60 83.3
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 2.0e-19 98.6 52 92.3
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 2.6e-19 98.2 60 83.3
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 2.8e-18 94.7 62 80.6
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 1.4e-17 92.4 52 88.5
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 5.9e-16 87.0 51 80.4
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 1.0e-15 86.3 55 76.4
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 1.0e-15 86.3 51 82.4
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 1.0e-15 86.3 57 75.4
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.7e-15 85.5 55 74.5
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.7e-15 85.5 60 70.0
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.7e-15 85.5 60 70.0
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 2.9e-15 84.7 54 74.1
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 5.0e-15 84.0 54 74.1
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 8.5e-15 83.2 47 89.4
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 1.1e-14 82.8 60 65.0
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 1.5e-14 82.4 51 78.4
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 2.5e-14 81.6 55 69.1
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 3.2e-14 81.3 57 70.2
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 3.2e-14 81.3 54 70.4
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 3.2e-14 81.3 57 66.7
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 5.5e-14 80.5 67 62.7
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 5.5e-14 80.5 60 61.7
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 5.5e-14 80.5 53 73.6
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 7.2e-14 80.1 50 76.0
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 7.2e-14 80.1 54 68.5
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 9.4e-14 79.7 56 71.4
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 9.4e-14 79.7 50 74.0
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 1.2e-13 79.3 51 74.5
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 1.2e-13 79.3 60 63.3
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 1.2e-13 79.3 56 64.3
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 1.2e-13 79.3 52 75.0
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 2.1e-13 78.6 64 64.1
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 2.1e-13 78.6 55 65.5
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 2.1e-13 78.6 54 66.7
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 2.7e-13 78.2 57 63.2
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 3.6e-13 77.8 57 63.2
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 3.6e-13 77.8 50 72.0
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 3.6e-13 77.8 60 60.0
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 3.6e-13 77.8 52 71.2
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 4.7e-13 77.4 61 63.9
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 4.7e-13 77.4 50 70.0
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 6.1e-13 77.0 56 60.7
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 6.1e-13 77.0 56 60.7
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 6.1e-13 77.0 56 60.7
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 8.0e-13 76.6 57 64.9
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 1.0e-12 76.3 57 61.4
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 1.0e-12 76.3 60 63.3
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 2.3e-12 75.1 51 68.6
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 3.0e-12 74.7 60 56.7
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 4.0e-12 74.3 53 66.0
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 6.8e-12 73.6 53 66.0
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 6.8e-12 73.6 45 77.8
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 6.8e-12 73.6 51 70.6
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 1.5e-11 72.4 57 56.1
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 2.0e-11 72.0 52 63.5
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 2.6e-11 71.6 51 64.7
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.6e-11 71.6 55 65.5
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 2.6e-11 71.6 61 60.7
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 3.4e-11 71.2 51 64.7
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 1.7e-10 68.9 43 74.4
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.7e-10 68.9 59 59.3
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 1.7e-10 68.9 59 59.3
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 8.3e-10 66.6 57 56.1
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 1.4e-09 65.9 55 56.4
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 1.8e-09 65.5 55 60.0
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 2.4e-09 65.1 49 71.4
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 2.7e-08 61.6 40 67.5
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 4.5e-08 60.8 49 61.2
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 1.5e-06 55.8 44 61.4
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 2.5e-06 55.1 49 61.2
SalBow7G4816 Salvia bowleyana HOM05D007573 ORTHO05D009938 3.3e-06 54.7 97 40.2


User provided reference genes

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