Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29549 Brassica carinata HOM05D009851 ORTHO05D008654 6.4e-93 344.4 212 100.0
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 7.1e-68 261.2 214 69.2
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 3.1e-63 245.7 212 71.2
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 3.1e-63 245.7 212 68.4
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 3.1e-63 245.7 215 71.2
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 1.7e-61 240.0 212 66.5
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 1.9e-60 236.5 205 70.2
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 6.9e-55 218.0 215 64.2
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 1.3e-53 213.8 219 59.8
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 1.6e-51 206.8 229 57.6
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 2.5e-49 199.5 231 58.0
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 6.5e-45 184.9 218 61.9
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 6.5e-29 131.7 75 88.0
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 3.2e-28 129.4 256 40.2
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 9.4e-28 127.9 264 36.4
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 1.0e-26 124.4 266 36.1
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 3.5e-22 109.4 285 33.3
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 7.7e-22 108.2 271 35.1
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 1.8e-18 97.1 243 33.7
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 3.0e-18 96.3 259 33.2
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 3.0e-18 96.3 259 33.2
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 3.0e-18 96.3 259 33.2
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 8.8e-18 94.7 280 33.9
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 1.5e-17 94.0 257 36.6
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 4.4e-17 92.4 243 32.9
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 7.5e-17 91.7 245 35.5
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 1.2e-14 84.3 222 41.9
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 4.5e-14 82.4 207 42.0
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 5.9e-14 82.0 210 43.3
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 5.0e-13 79.0 205 41.0
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 5.0e-13 79.0 205 41.0
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 5.0e-13 79.0 202 40.1
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 6.6e-13 78.6 226 41.2
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 2.5e-12 76.6 204 40.7
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 7.3e-12 75.1 243 37.0
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 9.5e-12 74.7 204 33.3
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 1.6e-11 73.9 213 42.3
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 3.6e-11 72.8 206 41.7
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 6.1e-11 72.0 242 38.0
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 6.1e-11 72.0 213 38.0
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 1.4e-10 70.9 226 35.8
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 2.3e-10 70.1 203 36.9
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 2.3e-10 70.1 208 40.9
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 3.0e-10 69.7 196 35.7
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 3.0e-10 69.7 215 37.2
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 5.2e-10 68.9 221 40.3
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 5.2e-10 68.9 238 33.6
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 6.8e-10 68.6 207 37.7
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 8.9e-10 68.2 211 40.3
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 1.2e-09 67.8 211 35.5
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 1.5e-09 67.4 205 40.0
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 2.0e-09 67.0 218 33.0
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 3.4e-09 66.2 214 37.4
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 4.4e-09 65.9 250 36.4
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 4.4e-09 65.9 224 29.0
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 5.7e-09 65.5 72 51.4
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 9.8e-09 64.7 252 32.9
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 9.8e-09 64.7 58 56.9
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.3e-08 64.3 201 39.8
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 1.3e-08 64.3 215 36.7
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 2.2e-08 63.5 243 33.7
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 2.9e-08 63.2 211 38.9
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 3.7e-08 62.8 208 35.6
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 3.7e-08 62.8 231 36.4
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 4.9e-08 62.4 220 41.4
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 4.9e-08 62.4 211 38.9
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 6.4e-08 62.0 208 35.1
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 8.3e-08 61.6 214 36.9
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 1.1e-07 61.2 217 39.2
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 1.4e-07 60.8 218 35.3
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 1.4e-07 60.8 215 37.2
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 1.8e-07 60.5 204 37.3
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 7.0e-07 58.5 208 43.3
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 7.0e-07 58.5 225 34.2
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 9.2e-07 58.2 53 56.6
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 9.2e-07 58.2 214 39.3
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 3.5e-06 56.2 219 36.5
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 5.9e-06 55.5 225 27.6
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 5.9e-06 55.5 240 31.7
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 5.9e-06 55.5 60 50.0
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 5.9e-06 55.5 212 38.2


User provided reference genes

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