Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.6e-96 356.3 206 100.0
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 1.6e-93 346.3 207 98.1
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 1.1e-92 343.6 206 97.1
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 1.4e-92 343.2 205 97.1
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 2.5e-86 322.4 208 90.4
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 1.7e-82 309.7 209 86.1
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 8.4e-82 307.4 207 85.5
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 3.9e-79 298.5 208 85.1
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 6.7e-79 297.7 208 85.6
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 1.5e-78 296.6 208 84.1
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 1.5e-78 296.6 211 87.7
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.9e-78 296.2 207 84.1
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 3.3e-78 295.4 206 85.4
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 4.8e-77 291.6 207 83.6
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 4.8e-77 291.6 207 83.6
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 1.1e-76 290.4 206 83.0
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 1.8e-76 289.7 206 83.5
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 3.2e-65 252.3 197 76.6
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 2.7e-64 249.2 197 72.6
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 4.5e-59 231.9 145 89.7
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 8.5e-58 227.6 136 93.4
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 8.5e-58 227.6 136 93.4
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 1.7e-50 203.4 150 81.3
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 4.2e-49 198.7 194 61.9
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 4.2e-49 198.7 201 61.7
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 4.2e-49 198.7 202 61.4
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 2.1e-48 196.4 200 60.5
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.7e-48 196.1 197 60.4
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 4.7e-48 195.3 188 62.8
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 2.3e-47 193.0 191 63.9
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 6.7e-47 191.4 194 62.4
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 8.8e-47 191.0 186 60.2
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 1.2e-46 190.7 194 62.4
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.2e-46 190.7 194 62.4
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 1.5e-46 190.3 189 61.4
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 2.6e-46 189.5 202 61.9
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 2.6e-46 189.5 201 61.2
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 2.6e-46 189.5 192 62.0
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 4.4e-46 188.7 195 62.1
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 5.7e-46 188.3 190 61.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 9.7e-46 187.6 147 72.1
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.7e-45 186.8 194 61.3
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 2.2e-45 186.4 190 60.5
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 2.2e-45 186.4 191 60.2
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 2.8e-45 186.0 197 60.4
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.8e-45 186.0 194 61.3
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 4.8e-45 185.3 196 61.2
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 4.8e-45 185.3 196 61.2
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 6.3e-45 184.9 199 59.8
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 1.1e-44 184.1 155 67.7
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.4e-44 183.7 203 58.6
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 1.4e-44 183.7 190 61.1
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.8e-44 183.3 194 57.7
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.8e-44 183.3 203 58.6
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 1.8e-44 183.3 199 57.8
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 3.1e-44 182.6 202 59.9
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.1e-44 182.6 203 59.1
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 4.1e-44 182.2 197 59.4
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 4.1e-44 182.2 187 62.6
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 5.3e-44 181.8 180 66.7
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 7.0e-44 181.4 196 60.2
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 9.1e-44 181.0 199 57.3
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.2e-43 180.6 148 68.2
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 1.6e-43 180.3 201 58.7
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.7e-43 179.5 150 71.3
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 4.5e-43 178.7 195 56.4
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 5.9e-43 178.3 201 56.2
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 7.7e-43 177.9 190 57.9
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 1.0e-42 177.6 191 56.5
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 1.3e-42 177.2 154 66.9
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 2.2e-42 176.4 184 59.2
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 2.2e-42 176.4 184 59.2
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 2.9e-42 176.0 192 57.8
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 3.8e-42 175.6 191 56.0
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 5.0e-42 175.3 128 73.4
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 6.5e-42 174.9 182 56.6
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.1e-41 174.1 148 67.6
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 1.9e-41 173.3 164 65.2
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 1.9e-41 173.3 191 58.1
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 2.5e-41 172.9 168 66.7
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 7.2e-41 171.4 160 64.4
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 1.6e-40 170.2 192 57.8
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 2.1e-40 169.9 148 66.9
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 2.7e-40 169.5 197 57.9
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 4.7e-40 168.7 124 71.8
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 8.0e-40 167.9 146 67.8
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 1.0e-39 167.5 169 64.5
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 1.8e-39 166.8 182 56.0
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 3.0e-39 166.0 147 65.3
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 3.0e-39 166.0 149 66.4
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 4.0e-39 165.6 211 54.5
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 8.8e-39 164.5 112 79.5
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 1.5e-38 163.7 144 68.8
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 4.4e-38 162.2 125 69.6
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 7.5e-38 161.4 197 53.8
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 9.8e-38 161.0 197 53.3
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 1.7e-37 160.2 125 72.8
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 4.8e-37 158.7 195 55.4
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.1e-36 157.5 192 53.6
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 1.1e-36 157.5 190 52.6
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 1.1e-36 157.5 203 54.7
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 5.4e-36 155.2 119 72.3
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 1.0e-34 151.0 200 52.0
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 2.5e-33 146.4 191 51.8
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 2.5e-33 146.4 148 58.8
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 4.2e-33 145.6 158 57.0
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 7.2e-33 144.8 158 57.0
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 9.5e-33 144.4 137 61.3
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 1.4e-31 140.6 143 60.8
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.3e-29 134.0 245 41.6
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 6.3e-29 131.7 177 48.0
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 4.1e-28 129.0 108 63.0
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 5.4e-28 128.6 107 64.5
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 5.4e-28 128.6 184 49.5
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 7.0e-28 128.3 123 57.7
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 8.6e-26 121.3 127 57.5
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 2.8e-24 116.3 116 57.8
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 6.4e-21 105.1 75 70.7
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 6.4e-21 105.1 79 64.6
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 8.3e-21 104.8 116 53.4
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 6.6e-18 95.1 167 42.5
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.4e-15 87.4 69 68.1
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 3.1e-15 86.3 121 52.9
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 8.9e-15 84.7 86 55.8
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 2.6e-14 83.2 106 50.0
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 4.1e-12 75.9 120 50.8
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 1.9e-09 67.0 81 49.4
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.2e-08 64.3 49 71.4
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 2.8e-08 63.2 75 61.3
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 3.6e-08 62.8 40 82.5


User provided reference genes

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