Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29537 Brassica carinata HOM05D008621 ORTHO05D010242 4.1e-173 611.3 311 100.0
C05p52100 Brassica napus HOM05D008621 ORTHO05D010242 8.0e-169 597.0 324 95.1
BraA05t22253Z Brassica rapa HOM05D008621 ORTHO05D010242 2.4e-157 558.9 330 89.1
A05p34320 Brassica napus HOM05D008621 ORTHO05D010242 3.0e-147 525.4 330 84.8
Thhalv10021100m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 1.1e-122 443.7 339 75.2
A01p38850 Brassica napus HOM05D008621 ORTHO05D010242 4.5e-119 431.8 336 72.3
BcaC09g48475 Brassica carinata HOM05D008621 ORTHO05D010242 2.5e-117 426.0 338 71.6
BolC1t04897H Brassica oleracea HOM05D008621 ORTHO05D010242 2.5e-117 426.0 338 71.6
C01p49400 Brassica napus HOM05D008621 ORTHO05D010242 3.2e-117 425.6 338 71.6
BcaB04g20947 Brassica carinata HOM05D008621 ORTHO05D010242 9.3e-117 424.1 336 72.0
CARHR090090 Cardamine hirsuta HOM05D008621 ORTHO05D010242 1.2e-116 423.7 338 71.3
BraA01t03931Z Brassica rapa HOM05D008621 ORTHO05D010242 8.7e-115 417.5 331 71.3
AT3G15115 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 4.3e-114 415.2 342 71.1
AL3G27470 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 1.4e-109 400.2 339 69.9
BolC5t33895H Brassica oleracea HOM05D008621 ORTHO05D010242 2.8e-105 386.0 227 90.7
Sp3g13320 Schrenkiella parvula HOM05D008621 ORTHO05D010242 1.5e-98 363.6 302 70.2
Aa31LG8G2330 Aethionema arabicum HOM05D008621 ORTHO05D010242 4.2e-85 318.9 327 61.5
Carub.0003s1476 Capsella rubella HOM05D008621 ORTHO05D010242 1.5e-74 283.9 233 72.5
THA.LOC104810457 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 1.1e-51 208.0 333 45.6
Thhalv10011625m.g Eutrema salsugineum HOM05D008621 ORTHO05D010242 9.5e-45 184.9 370 41.6
Sp1g39760 Schrenkiella parvula HOM05D008621 ORTHO05D010242 5.2e-43 179.1 391 38.6
BcaB04g17107 Brassica carinata HOM05D008621 ORTHO05D010242 3.4e-42 176.4 372 40.3
AT1G53180 Arabidopsis thaliana HOM05D008621 ORTHO05D010242 5.8e-42 175.6 386 40.4
AL1G61580 Arabidopsis lyrata HOM05D008621 ORTHO05D010242 4.9e-41 172.6 381 39.4
BcaB02g10936 Brassica carinata HOM05D008621 ORTHO05D010242 8.3e-41 171.8 369 40.4
Carub.0001s4237 Capsella rubella HOM05D008621 ORTHO05D010242 8.3e-41 171.8 378 39.9
BcaC08g44053 Brassica carinata HOM05D008621 ORTHO05D010242 4.1e-40 169.5 375 40.0
BolC6t36635H Brassica oleracea HOM05D008621 ORTHO05D010242 4.1e-40 169.5 375 40.0
A08p01770 Brassica napus HOM05D008621 ORTHO05D010242 7.1e-40 168.7 373 40.8
C03p91210 Brassica napus HOM05D008621 ORTHO05D010242 2.1e-39 167.2 370 39.7
THA.LOC104798755 Tarenaya hassleriana HOM05D008621 ORTHO05D010242 2.7e-39 166.8 318 39.6
BolC3t21434H Brassica oleracea HOM05D008621 ORTHO05D010242 7.8e-39 165.2 369 38.8
BcaC01g01366 Brassica carinata HOM05D008621 ORTHO05D010242 2.3e-38 163.7 369 38.5
C06p14570 Brassica napus HOM05D008621 ORTHO05D010242 3.0e-38 163.3 375 38.7
A05p18520 Brassica napus HOM05D008621 ORTHO05D010242 2.5e-37 160.2 371 38.3
BraA05t20746Z Brassica rapa HOM05D008621 ORTHO05D010242 1.6e-36 157.5 376 38.0
Cpa.g.sc80.10 Carica papaya HOM05D008621 ORTHO05D010242 4.3e-29 132.9 313 35.1
CARHR043410 Cardamine hirsuta HOM05D008621 ORTHO05D010242 4.8e-28 129.4 277 41.9
Ciclev10010201m.g Citrus clementina HOM05D008621 ORTHO05D001329 9.0e-27 125.2 336 34.8
Atru.chr2.2385 Acer truncatum HOM05D008621 ORTHO05D010242 7.6e-26 122.1 342 33.0
Aa31LG10G1950 Aethionema arabicum HOM05D008621 ORTHO05D010242 1.0e-22 111.7 260 36.9
Potri.001G372800 Populus trichocarpa HOM05D008621 ORTHO05D010242 1.7e-22 110.9 341 34.3
Sabra16G0245400 Salix brachista HOM05D008621 ORTHO05D010242 1.1e-21 108.2 339 35.7
Glyma.12G227100 Glycine max HOM05D001501 ORTHO05D001329 9.6e-21 105.1 353 31.2
Gohir.A01G060500 Gossypium hirsutum HOM05D001501 ORTHO05D001329 6.2e-20 102.4 336 33.3
Gorai.002G066500 Gossypium raimondii HOM05D001501 ORTHO05D001329 2.4e-19 100.5 332 33.1
Duzib213G0990 Durio zibethinus HOM05D001501 ORTHO05D001329 3.1e-19 100.1 335 31.9
Phvul.005G069500 Phaseolus vulgaris HOM05D001501 ORTHO05D001329 6.9e-19 99.0 341 31.1
Thecc.07G099300 Theobroma cacao HOM05D001501 ORTHO05D001329 6.9e-19 99.0 339 32.7
Gohir.D01G047000 Gossypium hirsutum HOM05D001501 ORTHO05D001329 9.0e-19 98.6 337 33.5
Glyma.13G273200 Glycine max HOM05D001501 ORTHO05D001329 2.0e-18 97.4 350 29.7
Prupe.4G173500 Prunus persica HOM05D001501 ORTHO05D001329 2.0e-18 97.4 364 31.9
Dinv20212 Davidia involucrata HOM05D001501 ORTHO05D001329 4.5e-18 96.3 341 33.1
Manes.15G090300 Manihot esculenta HOM05D008621 ORTHO05D010242 9.9e-18 95.1 343 28.9
Hma1.2p1_0313F.1_g121690 Hydrangea macrophylla HOM05D010484 ORTHO05D001329 1.3e-17 94.7 343 31.8
Medtr2g078620 Medicago truncatula HOM05D001501 ORTHO05D001329 2.2e-17 94.0 343 30.9
VMungo1080G0146 Vigna mungo HOM05D001501 ORTHO05D001329 2.9e-17 93.6 355 30.1
Manes.03G104500 Manihot esculenta HOM05D008621 ORTHO05D010242 4.9e-17 92.8 319 30.7
MD03G1235500 Malus domestica HOM05D001501 ORTHO05D001329 8.4e-17 92.0 349 28.7
Oeu051092.1 Olea europaea HOM05D010484 ORTHO05D010242 8.4e-17 92.0 305 31.1
QL08p023599 Quercus lobata HOM05D001501 ORTHO05D001329 1.6e-15 87.8 339 29.8
Cc05_g11620 Coffea canephora HOM05D010484 ORTHO05D010242 3.5e-15 86.7 333 32.7
TWI38G1368 Tripterygium wilfordii HOM05D001501 ORTHO05D001329 3.5e-15 86.7 302 29.1
MD11G1256500 Malus domestica HOM05D001501 ORTHO05D001329 4.6e-15 86.3 353 27.5
TPR.G17529 Trifolium pratense HOM05D001501 ORTHO05D001329 1.3e-14 84.7 339 28.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.8e-14 84.3 325 30.5
SGA_v2.0_scaffold70G23695 Striga asiatica HOM05D010484 ORTHO05D010242 2.3e-14 84.0 347 30.8
MSTRG.12891 Avicennia marina HOM05D010484 ORTHO05D001329 6.7e-14 82.4 346 28.3
FAN16G1511 Fragaria x ananassa HOM05D001501 ORTHO05D001329 8.7e-14 82.0 333 30.9
RcHm_v2.0_Chr5g0032271 Rosa chinensis HOM05D001501 ORTHO05D001329 2.5e-13 80.5 340 31.5
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 3.3e-13 80.1 322 29.8
Migut.H01963 Erythranthe guttata HOM05D010484 ORTHO05D010242 7.4e-13 79.0 335 31.0
FAN21G4066 Fragaria x ananassa HOM05D001501 ORTHO05D001329 1.3e-12 78.2 333 31.5
Lj3g0018355 Lotus japonicus HOM05D001501 ORTHO05D001329 2.8e-12 77.0 394 27.9
Cfa020621 Carpinus fangiana HOM05D001501 ORTHO05D001329 6.2e-12 75.9 343 29.7
Haze_09384 Corylus avellana HOM05D001501 ORTHO05D001329 6.2e-12 75.9 336 30.1
Actinidia35237 Actinidia chinensis HOM05D001501 ORTHO05D001329 1.4e-11 74.7 325 29.8
arahy.Tifrunner.gnm1.ann1.B8RZEA Arachis hypogaea HOM05D001501 ORTHO05D001329 6.9e-11 72.4 334 29.3
Rhsim04G0022900 Rhododendron simsii HOM05D010484 ORTHO05D010242 1.2e-10 71.6 308 30.5
CANSAT35G0828 Cannabis sativa HOM05D001501 ORTHO05D001329 2.0e-10 70.9 339 26.5
Lalb_Chr20g0109461 Lupinus albus HOM05D001501 ORTHO05D001329 2.0e-10 70.9 341 28.7
Psat5g241480 Pisum sativum HOM05D001501 ORTHO05D001329 2.0e-10 70.9 334 28.1
FvH4_3g19190 Fragaria vesca HOM05D001501 ORTHO05D001329 3.4e-10 70.1 338 27.5
Nitab4.5_0000831g0120 Nicotiana tabacum HOM05D010484 ORTHO05D010242 5.8e-10 69.3 322 32.0
CSS0041099 Camellia sinensis var. sinensis HOM05D001501 ORTHO05D001329 7.6e-10 68.9 249 30.9
Eucgr.F03292 Eucalyptus grandis HOM05D001501 ORTHO05D001329 1.7e-09 67.8 371 28.6
FAN25G3082 Fragaria x ananassa HOM05D001501 ORTHO05D001329 2.2e-09 67.4 339 27.4
FAN11G0392 Fragaria x ananassa HOM05D001501 ORTHO05D001329 4.9e-09 66.2 339 27.1
ClCG05G009220 Citrullus lanatus HOM05D001501 ORTHO05D001329 6.5e-09 65.9 214 31.8
SalBow7G1441 Salvia bowleyana HOM05D010484 ORTHO05D010242 8.4e-09 65.5 220 31.4
vmacro09518 Vaccinium macrocarpon HOM05D000070 ORTHO05D006683 1.4e-08 64.7 175 34.9
CiPaw.11G166600 Carya illinoinensis HOM05D001501 ORTHO05D001329 1.9e-08 64.3 319 25.1
DCAR_020999 Daucus carota HOM05D008621 ORTHO05D010242 1.9e-08 64.3 202 33.7
Nitab4.5_0000246g0060 Nicotiana tabacum HOM05D010484 ORTHO05D010242 4.2e-08 63.2 314 28.3
Peaxi162Scf00069g01925 Petunia axillaris HOM05D010484 ORTHO05D010242 7.1e-08 62.4 327 30.3
Lsat_1_v5_gn_9_98300 Lactuca sativa HOM05D016023 ORTHO05D010242 2.1e-07 60.8 198 31.3
arahy.Tifrunner.gnm1.ann1.14Q3ET Arachis hypogaea HOM05D001501 ORTHO05D001329 2.7e-07 60.5 336 27.1
Nn1g04269 Nelumbo nucifera HOM05D001501 ORTHO05D001329 4.6e-07 59.7 297 27.6
GSVIVG01014264001 Vitis vinifera HOM05D001501 ORTHO05D001329 6.0e-07 59.3 192 31.8
MSTRG.15244 Avicennia marina HOM05D010484 ORTHO05D010242 7.9e-07 58.9 304 26.6
CsaV3_3G019560 Cucumis sativus L. HOM05D001501 ORTHO05D001329 1.8e-06 57.8 213 29.6
DCAR_017119 Daucus carota HOM05D010484 ORTHO05D010242 3.0e-06 57.0 309 24.3


User provided reference genes

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