Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29517 Brassica carinata HOM05D006614 ORTHO05D008217 0.0e+00 1151.3 580 100.0
C05p52250 Brassica napus HOM05D006614 ORTHO05D008217 1.9e-309 1065.1 606 91.6
A05p34510 Brassica napus HOM05D006614 ORTHO05D008217 1.9e-301 1038.5 608 88.7
BraA05t22271Z Brassica rapa HOM05D006614 ORTHO05D008217 1.9e-301 1038.5 608 88.7
BolC5t33914H Brassica oleracea HOM05D006614 ORTHO05D008217 2.5e-301 1038.1 612 89.1
Sp3g13110 Schrenkiella parvula HOM05D006614 ORTHO05D008217 1.2e-282 976.1 615 83.3
AT3G14900 Arabidopsis thaliana HOM05D006614 ORTHO05D008217 9.7e-277 956.4 618 80.9
BcaB06g25331 Brassica carinata HOM05D006614 ORTHO05D008217 5.3e-275 950.7 615 81.6
Carub.0003s1456 Capsella rubella HOM05D006614 ORTHO05D008217 7.7e-274 946.8 613 81.7
AL3G27220 Arabidopsis lyrata HOM05D006614 ORTHO05D008217 1.7e-273 945.7 611 81.5
Thhalv10022322m.g Eutrema salsugineum HOM05D006614 ORTHO05D008217 5.5e-272 940.6 609 81.8
CARHR089840 Cardamine hirsuta HOM05D006614 ORTHO05D008217 2.0e-266 922.2 625 78.7
THA.LOC104822565 Tarenaya hassleriana HOM05D006614 ORTHO05D008217 5.4e-243 844.3 624 70.7
Aa31LG8G2110 Aethionema arabicum HOM05D006614 ORTHO05D008217 1.9e-235 819.3 623 69.5
Manes.15G094800 Manihot esculenta HOM05D006614 ORTHO05D008217 1.3e-191 673.7 594 59.3
Gorai.001G269000 Gossypium raimondii HOM05D006614 ORTHO05D008217 7.7e-189 664.5 596 60.2
COL.COLO4_17543 Corchorus olitorius HOM05D006614 ORTHO05D008217 1.7e-188 663.3 597 59.8
Cpa.g.sc77.8 Carica papaya HOM05D006614 ORTHO05D008217 2.9e-188 662.5 607 58.5
Gohir.D07G233600 Gossypium hirsutum HOM05D006614 ORTHO05D008217 3.8e-188 662.1 600 59.7
PGR142G0467 Punica granatum HOM05D006614 ORTHO05D008217 1.9e-187 659.8 604 57.1
Duzib213G0629 Durio zibethinus HOM05D006614 ORTHO05D008217 4.2e-187 658.7 594 59.3
Gohir.A07G226400 Gossypium hirsutum HOM05D006614 ORTHO05D008217 5.5e-187 658.3 601 59.4
Thecc.07G117000 Theobroma cacao HOM05D006614 ORTHO05D008217 7.2e-187 657.9 595 59.7
FAN16G2994 Fragaria x ananassa HOM05D006614 ORTHO05D008217 9.4e-187 657.5 561 60.6
FvH4_3g18290 Fragaria vesca HOM05D006614 ORTHO05D008217 1.6e-186 656.8 563 60.6
FAN11G1715 Fragaria x ananassa HOM05D006614 ORTHO05D008217 2.7e-186 656.0 561 60.4
RcHm_v2.0_Chr5g0030921 Rosa chinensis HOM05D006614 ORTHO05D008217 4.6e-186 655.2 617 57.2
Glyma.14G066300 Glycine max HOM05D006614 ORTHO05D008217 6.1e-186 654.8 584 59.1
Medtr5g080700 Medicago truncatula HOM05D006614 ORTHO05D008217 2.3e-185 652.9 552 60.0
Psat2g179000 Pisum sativum HOM05D006614 ORTHO05D008217 8.8e-185 651.0 564 61.0
Sc16g0007600 Simmondsia chinensis HOM05D006614 ORTHO05D008217 4.3e-184 648.7 544 62.3
DCAR_021025 Daucus carota HOM05D006614 ORTHO05D008217 7.4e-184 647.9 557 59.4
TPR.G25839 Trifolium pratense HOM05D006614 ORTHO05D008217 2.8e-183 646.0 559 60.3
Ah.09g230960 Amaranthus hybridus HOM05D006614 ORTHO05D008217 3.1e-182 642.5 627 56.6
Migut.M00728 Erythranthe guttata HOM05D006614 ORTHO05D008217 4.1e-182 642.1 536 61.6
Peaxi162Scf00111g01423 Petunia axillaris HOM05D006614 ORTHO05D008217 9.1e-182 641.0 597 56.3
Phvul.008G231100 Phaseolus vulgaris HOM05D006614 ORTHO05D008217 1.2e-181 640.6 561 60.1
HanXRQChr15g0476201 Helianthus annuus HOM05D006614 ORTHO05D008217 3.4e-181 639.0 580 58.8
LjContig00141g0022614 Lotus japonicus HOM05D006614 ORTHO05D008217 7.7e-181 637.9 551 61.2
CSS0027020 Camellia sinensis var. sinensis HOM05D006614 ORTHO05D008217 1.3e-180 637.1 614 56.5
Nitab4.5_0006953g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 3.8e-180 635.6 607 54.7
Atru.chr2.2145 Acer truncatum HOM05D006614 ORTHO05D008217 1.1e-179 634.0 587 56.9
VMungo0647G0674 Vigna mungo HOM05D006614 ORTHO05D008217 1.1e-179 634.0 583 59.3
TWI38G0322 Tripterygium wilfordii HOM05D006614 ORTHO05D008217 1.9e-179 633.3 595 57.1
GSVIVG01014198001 Vitis vinifera HOM05D006614 ORTHO05D008217 1.9e-179 633.3 593 55.3
Ca_05900_v3 Cicer arietinum L. HOM05D006614 ORTHO05D008217 3.2e-179 632.5 560 59.8
Nitab4.5_0003565g0010 Nicotiana tabacum HOM05D006614 ORTHO05D008217 1.6e-178 630.2 582 56.0
CiPaw.11G160300 Carya illinoinensis HOM05D006614 ORTHO05D008217 3.6e-178 629.0 614 56.4
Sed0001562 Sechium edule HOM05D006614 ORTHO05D008217 3.6e-178 629.0 553 59.5
Hma1.2p1_0290F.1_g114830 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 4.7e-178 628.6 572 58.2
PGSC0003DMG400046940 Solanum tuberosum HOM05D006614 ORTHO05D008217 4.7e-178 628.6 506 62.8
TAR375G0652 Trochodendron aralioides HOM05D006614 ORTHO05D008217 4.7e-178 628.6 639 52.6
Actinidia12578 Actinidia chinensis HOM05D006614 ORTHO05D008217 6.1e-178 628.2 566 56.9
Thecc.07G116400 Theobroma cacao HOM05D006614 ORTHO05D008217 1.4e-177 627.1 521 62.8
Lj1P829T27 Lonicera japonica HOM05D006614 ORTHO05D008217 5.7e-176 621.7 557 61.0
Solyc07g062440.1 Solanum lycopersicum HOM05D006614 ORTHO05D008217 9.7e-176 620.9 505 62.6
Sopen07g030680 Solanum pennellii HOM05D006614 ORTHO05D008217 1.7e-175 620.2 505 62.4
Lalb_Chr17g0346371 Lupinus albus HOM05D006614 ORTHO05D008217 2.8e-175 619.4 561 56.7
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 8.2e-175 617.8 570 56.7
Prupe.4G164700 Prunus persica HOM05D006614 ORTHO05D008217 1.1e-174 617.5 549 59.6
vmacro23466 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 1.4e-174 617.1 499 61.3
Potri.001G390600 Populus trichocarpa HOM05D006614 ORTHO05D008217 2.4e-174 616.3 611 52.9
Cc05_g11080 Coffea canephora HOM05D006614 ORTHO05D008217 5.3e-174 615.1 592 55.1
ClCG11G017450 Citrullus lanatus HOM05D006614 ORTHO05D008217 1.2e-173 614.0 536 59.5
Rhsim06G0208100 Rhododendron simsii HOM05D006614 ORTHO05D008217 2.9e-172 609.4 604 54.6
MD03G1243600 Malus domestica HOM05D006614 ORTHO05D008217 3.8e-172 609.0 543 59.5
CANSAT35G1108 Cannabis sativa HOM05D006614 ORTHO05D008217 1.9e-171 606.7 622 53.5
SalBow5G0223 Salvia bowleyana HOM05D006614 ORTHO05D008217 5.5e-171 605.1 587 55.2
EL10Ac8g18445 Beta vulgaris HOM05D006614 ORTHO05D008217 1.6e-170 603.6 568 57.4
arahy.Tifrunner.gnm1.ann1.087IU6 Arachis hypogaea HOM05D006614 ORTHO05D008217 3.6e-170 602.4 550 57.6
MELO3C025640.2 Cucumis melo HOM05D006614 ORTHO05D008217 3.6e-170 602.4 546 56.8
CsaV3_4G033120 Cucumis sativus L. HOM05D006614 ORTHO05D008217 3.6e-170 602.4 535 57.2
Cfa019566 Carpinus fangiana HOM05D006614 ORTHO05D008217 4.7e-170 602.1 526 60.5
CAN.G375.15 Capsicum annuum HOM05D006614 ORTHO05D008217 2.3e-169 599.7 603 54.1
QL12p002313 Quercus lobata HOM05D006614 ORTHO05D008217 5.2e-169 598.6 540 59.6
MSTRG.6677 Avicennia marina HOM05D006614 ORTHO05D008217 6.7e-169 598.2 508 59.8
Haze_09323 Corylus avellana HOM05D006614 ORTHO05D008217 8.8e-169 597.8 531 59.1
PSO421G0295 Papaver somniferum HOM05D006614 ORTHO05D008217 1.5e-168 597.0 547 55.6
SGA_v2.0_scaffold34G13782 Striga asiatica HOM05D006614 ORTHO05D008217 2.0e-168 596.7 509 60.1
arahy.Tifrunner.gnm1.ann1.UH0U35 Arachis hypogaea HOM05D006614 ORTHO05D008217 2.6e-168 596.3 550 57.3
PSO063G1163 Papaver somniferum HOM05D006614 ORTHO05D008217 1.3e-167 594.0 553 55.5
CDE12G0873 Ceratophyllum demersum HOM05D006614 ORTHO05D008217 6.3e-167 591.7 537 57.2
Oeu061358.1 Olea europaea HOM05D006614 ORTHO05D008217 2.4e-166 589.7 553 55.0
unitig_747.g21586 Utricularia gibba HOM05D006614 ORTHO05D008217 3.5e-165 585.9 540 56.1
ECA240G1555 Erigeron canadensis HOM05D006614 ORTHO05D008217 2.2e-164 583.2 561 56.9
Aqoxy1G00012 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 1.2e-162 577.4 549 57.4
AUR62021467 Chenopodium quinoa HOM05D006614 ORTHO05D008217 1.4e-158 563.9 611 51.2
MBI12_g10753_MAGBIO Magnolia biondii HOM05D006614 ORTHO05D008217 2.0e-157 560.1 478 59.2
HPP92_015867 Vanilla planifolia HOM05D006614 ORTHO05D008217 3.6e-154 549.3 578 49.3
AUR62010952 Chenopodium quinoa HOM05D006614 ORTHO05D008217 4.8e-151 538.9 622 48.1
FAN25G0567 Fragaria x ananassa HOM05D006614 ORTHO05D008217 2.8e-146 523.1 595 50.4
ATR0810G004 Amborella trichopoda HOM05D006614 ORTHO05D008217 1.7e-140 503.8 553 51.2
vmacro11940 Vaccinium macrocarpon HOM05D006614 ORTHO05D008217 2.3e-140 503.4 496 52.8
Hma1.2p1_0290F.1_g114840 Hydrangea macrophylla HOM05D006614 ORTHO05D008217 7.3e-139 498.4 468 56.2
Zm00001eb078480 Zea mays HOM05D006614 ORTHO05D008217 3.1e-137 493.0 536 49.1
Psat0s3066g0080 Pisum sativum HOM05D006614 ORTHO05D008217 7.5e-136 488.4 385 62.1
Os04g0497900 Oryza sativa ssp. japonica HOM05D006614 ORTHO05D008217 5.4e-134 482.3 532 48.5
Sabra16G0256000 Salix brachista HOM05D006614 ORTHO05D008217 7.8e-133 478.4 360 61.4
Eucgr.K01881 Eucalyptus grandis HOM05D006614 ORTHO05D008217 2.1e-130 470.3 631 44.7
Aqoxy3G00116 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 8.4e-111 405.2 421 53.2
Glyma.02G250300 Glycine max HOM05D006614 ORTHO05D008217 1.9e-99 367.5 348 58.6
Ciclev10023881m.g Citrus clementina HOM05D006614 ORTHO05D008217 1.8e-97 360.9 343 55.1
SEGI_22211 Sequoiadendron giganteum HOM05D006614 ORTHO05D008217 5.8e-80 302.8 532 35.5
AagrBONN_evm.TU.Sc2ySwM_228.5094 Anthoceros agrestis HOM05D006614 ORTHO05D008217 3.2e-46 190.7 453 33.1
Pp3c16_3160 Physcomitrium patens HOM05D006614 ORTHO05D008217 1.5e-43 181.8 447 33.3
SMO356G0760 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 2.6e-43 181.0 270 37.0
SMO356G0609 Selaginella moellendorffii HOM05D006614 ORTHO05D008217 1.7e-42 178.3 271 36.2
Mapoly0097s0086 Marchantia polymorpha HOM05D006614 ORTHO05D008217 7.7e-40 169.5 300 32.7
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.0e-31 142.5 140 55.0
MD11G1263800 Malus domestica HOM05D006614 ORTHO05D008217 3.7e-26 124.0 91 62.6
Dinv02793 Davidia involucrata HOM05D006614 ORTHO05D008217 7.0e-25 119.8 83 67.5
Psat0s3066g0040 Pisum sativum HOM05D006614 ORTHO05D008217 1.3e-23 115.5 74 73.0
Cfa001947 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.5e-22 112.1 89 62.9
HPP92_015860 Vanilla planifolia HOM05D006614 ORTHO05D008217 1.4e-20 105.5 68 63.2
FAN21G3229 Fragaria x ananassa HOM05D006614 ORTHO05D008217 1.8e-20 105.1 84 60.7
CBR_g47994 Chara braunii HOM05D006614 ORTHO05D008217 5.8e-19 100.1 233 27.0
Aqoxy3G00115 Aquilegia oxysepala HOM05D006614 ORTHO05D008217 4.1e-17 94.0 83 62.7


User provided reference genes

Program Settings