Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.0e-189 665.6 340 100.0
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 2.9e-164 582.0 342 88.6
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 1.6e-162 576.2 337 91.1
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 8.0e-162 573.9 337 90.8
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.7e-159 566.2 342 88.9
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 1.9e-155 552.7 337 86.9
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-150 537.0 348 83.6
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 1.4e-150 536.6 345 82.9
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 9.1e-150 533.9 345 82.6
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.3e-148 530.0 345 82.0
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 3.3e-147 525.4 345 81.7
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 4.2e-147 525.0 332 83.7
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.8e-145 519.6 345 80.9
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 2.3e-145 519.2 332 83.1
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 8.9e-145 517.3 348 80.2
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 3.4e-144 515.4 332 82.8
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 4.1e-142 508.4 348 79.6
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.6e-141 506.5 348 79.6
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.0e-141 506.1 348 79.9
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 5.4e-134 481.5 334 76.6
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 3.0e-132 475.7 341 74.8
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 6.6e-132 474.6 347 73.2
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.3e-131 472.2 334 75.7
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 6.2e-130 468.0 334 74.3
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.4e-129 466.8 347 72.3
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 3.1e-129 465.7 348 71.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 3.7e-127 458.8 329 74.2
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 3.0e-116 422.5 341 65.7
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 6.6e-116 421.4 300 71.7
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.9e-115 419.9 326 68.4
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.3e-115 417.9 326 67.8
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.6e-115 417.5 326 68.1
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.4e-113 413.7 312 69.2
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.4e-113 412.9 313 67.7
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 5.2e-113 411.8 324 67.3
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.2e-113 411.8 326 66.0
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 8.9e-113 411.0 331 65.6
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 8.9e-113 411.0 270 75.9
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 8.9e-113 411.0 270 75.2
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.5e-112 410.2 312 68.9
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.5e-112 410.2 326 66.3
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 5.8e-112 408.3 270 75.2
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.7e-111 406.8 306 68.6
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.9e-111 406.0 326 66.0
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 3.8e-111 405.6 296 69.9
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 4.9e-111 405.2 297 70.7
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 6.4e-111 404.8 272 75.4
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.1e-110 404.1 281 73.3
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.4e-110 403.7 321 66.4
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 1.4e-110 403.7 270 75.2
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.9e-110 403.3 270 74.4
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 3.2e-110 402.5 270 74.4
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 3.2e-110 402.5 318 67.6
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 7.1e-110 401.4 270 74.1
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 7.1e-110 401.4 340 64.1
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.6e-109 400.2 308 65.6
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 4.6e-109 398.7 305 68.9
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 4.6e-109 398.7 310 66.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 7.8e-109 397.9 270 73.7
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.3e-108 397.1 270 74.1
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.3e-108 396.4 290 70.7
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.3e-108 396.4 270 73.3
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 2.3e-108 396.4 319 66.1
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.9e-108 395.6 307 68.1
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 3.9e-108 395.6 271 73.4
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 1.9e-107 393.3 318 65.4
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.5e-107 392.9 335 64.2
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.3e-106 390.6 289 70.9
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.6e-106 390.2 325 65.2
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.6e-106 390.2 324 64.5
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 2.1e-106 389.8 316 64.9
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 2.8e-106 389.4 318 65.1
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 3.6e-106 389.0 271 72.7
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 3.6e-106 389.0 271 71.2
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.8e-106 388.7 294 67.3
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 4.8e-106 388.7 339 62.5
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.1e-105 387.5 268 72.0
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.1e-105 387.5 319 64.6
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.4e-105 387.1 302 66.6
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.4e-105 386.3 314 64.3
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 5.3e-105 385.2 272 71.0
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 6.9e-105 384.8 300 64.7
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 9.0e-105 384.4 271 72.3
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 9.0e-105 384.4 293 67.6
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 9.0e-105 384.4 304 66.4
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.2e-104 384.0 318 65.1
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.5e-104 383.6 271 72.7
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 2.0e-104 383.3 270 72.6
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 4.4e-104 382.1 292 68.2
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 4.4e-104 382.1 270 71.5
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 7.6e-104 381.3 272 71.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 9.9e-104 380.9 303 64.4
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 9.9e-104 380.9 318 64.5
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.7e-103 380.2 298 65.1
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.7e-103 380.2 271 71.2
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 2.2e-103 379.8 302 65.9
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 2.9e-103 379.4 268 71.3
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.8e-103 379.0 301 66.4
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 3.8e-103 379.0 309 64.4
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 3.8e-103 379.0 270 70.4
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 8.4e-103 377.9 270 71.9
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.9e-102 376.7 330 60.9
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 2.4e-102 376.3 305 63.3
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 3.2e-102 375.9 301 65.4
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 9.3e-102 374.4 270 70.7
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.0e-100 370.9 309 62.1
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.3e-100 370.5 266 69.5
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.7e-100 370.2 268 69.0
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 1.7e-100 370.2 311 61.7
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.7e-100 370.2 265 69.8
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 8.7e-100 367.9 271 67.5
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 9.6e-99 364.4 266 68.4
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.3e-98 364.0 277 68.2
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.3e-98 364.0 309 61.5
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 2.8e-98 362.8 272 65.4
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.6e-98 362.5 271 66.8
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 6.2e-98 361.7 324 58.6
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.1e-97 360.9 302 60.9
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.1e-97 360.9 268 67.5
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 3.1e-97 359.4 312 62.2
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 3.1e-97 359.4 259 70.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 9.0e-97 357.8 256 71.5
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.0e-96 356.7 343 58.3
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 8.4e-95 351.3 267 64.4
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 9.3e-94 347.8 281 63.7
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 3.5e-93 345.9 263 66.2
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 4.6e-93 345.5 306 60.8
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 6.7e-92 341.7 327 56.0
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 1.5e-91 340.5 300 58.3
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 5.6e-91 338.6 258 64.7
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 7.4e-91 338.2 269 65.4
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 4.8e-90 335.5 287 60.3
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 4.0e-89 332.4 305 57.7
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 4.2e-86 322.4 268 60.4
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 9.3e-86 321.2 277 63.5
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 6.0e-85 318.5 303 58.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.0e-84 317.8 180 84.4
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 3.9e-84 315.8 321 61.4
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 5.0e-79 298.9 256 62.5
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 3.2e-78 296.2 269 55.4
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 9.3e-78 294.7 270 55.9
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.2e-72 277.7 270 53.0
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 7.9e-69 265.0 276 53.6
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 8.8e-68 261.5 272 52.6
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 1.4e-65 254.2 268 47.0
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 2.0e-64 250.4 206 65.0
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 7.7e-64 248.4 229 59.4
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-63 247.7 173 74.0
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 5.0e-63 245.7 212 62.7
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 7.9e-61 238.4 288 47.9
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.8e-60 237.3 189 65.1
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.3e-58 231.1 220 60.9
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 7.2e-54 215.3 153 69.3
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.6e-53 213.0 117 85.5
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.0e-51 207.2 205 59.0
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 2.5e-46 190.3 170 58.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 9.8e-35 151.8 84 83.3
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.3e-34 151.4 169 48.5
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 5.4e-33 146.0 132 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.2e-30 135.6 185 44.9
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.0e-28 131.7 71 84.5
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.1e-25 121.7 78 76.9
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.2e-24 118.2 68 83.8
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.0e-23 115.2 280 30.7
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.7e-21 106.3 164 39.0
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.6e-19 100.5 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 8.6e-15 85.5 83 53.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 2.5e-14 84.0 136 39.7
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.6e-13 81.3 84 52.4
Lsat_1_v5_gn_5_112181 Lactuca sativa HOM05D002510 ORTHO05D007210 4.3e-06 56.6 47 59.6


User provided reference genes

Program Settings