Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-201 706.4 394 100.0
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-161 573.5 404 86.1
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.5e-159 565.8 339 94.1
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 4.7e-158 561.6 341 94.7
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 4.7e-158 561.6 339 94.4
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 3.4e-156 555.4 341 93.5
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 5.6e-151 538.1 345 85.8
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.5e-148 530.0 341 82.4
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 3.5e-145 518.8 302 85.8
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 4.6e-145 518.5 344 79.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.3e-144 516.9 302 85.4
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 2.3e-144 516.2 348 80.5
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 5.1e-144 515.0 340 79.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 8.7e-144 514.2 345 80.0
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.5e-143 513.5 302 85.1
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.5e-143 513.5 302 85.1
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 8.1e-142 507.7 338 80.5
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.6e-140 502.7 312 82.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 9.7e-127 457.6 344 75.9
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.8e-125 453.4 307 73.6
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 5.7e-119 431.8 302 71.2
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.1e-114 417.5 305 67.9
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 9.4e-114 414.5 303 69.0
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.7e-113 412.9 302 69.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 2.7e-113 412.9 303 69.0
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 6.1e-113 411.8 305 66.6
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.0e-112 411.0 305 66.6
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.9e-112 409.1 295 68.5
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.1e-111 407.5 307 65.5
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 4.4e-111 405.6 295 68.1
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 9.7e-111 404.4 301 66.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 9.7e-111 404.4 301 66.4
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.8e-110 402.9 295 68.5
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.8e-110 402.9 339 64.6
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.8e-110 402.9 294 67.0
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.1e-109 401.0 294 67.7
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.1e-109 401.0 305 66.9
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.4e-109 400.6 323 64.4
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.4e-109 400.6 294 66.3
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.2e-108 397.5 294 66.0
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.6e-108 396.4 304 65.5
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 7.7e-108 394.8 294 68.0
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 1.0e-107 394.4 306 64.7
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.7e-107 393.7 294 67.3
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.2e-107 393.3 301 64.1
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.2e-107 393.3 301 64.1
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.8e-107 392.5 294 68.0
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 3.8e-107 392.5 294 64.6
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 5.0e-107 392.1 294 67.3
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 8.5e-107 391.3 310 63.5
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 8.5e-107 391.3 305 63.6
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.4e-106 390.6 301 65.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 3.2e-106 389.4 304 63.2
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 5.5e-106 388.7 294 67.3
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 5.5e-106 388.7 294 67.0
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.2e-105 387.5 302 63.2
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.6e-105 387.1 295 64.7
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.7e-105 386.3 294 64.6
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.6e-105 386.0 304 64.1
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 4.7e-105 385.6 301 62.8
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 8.0e-105 384.8 294 65.3
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.0e-104 384.4 294 66.7
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.4e-104 384.0 294 67.3
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 3.0e-104 382.9 305 62.3
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.0e-104 382.9 295 66.1
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 3.9e-104 382.5 304 61.5
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 3.9e-104 382.5 295 62.7
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 6.7e-104 381.7 294 65.6
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.1e-103 380.9 306 62.1
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.5e-103 380.6 294 63.9
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-103 380.2 294 64.3
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.0e-103 380.2 294 64.3
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.3e-103 379.4 294 65.6
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 3.3e-103 379.4 304 62.2
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 5.7e-103 378.6 296 64.2
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.7e-102 377.1 298 61.1
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.7e-102 375.9 294 63.3
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 6.3e-102 375.2 305 63.0
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.8e-101 373.6 339 61.9
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.8e-101 373.6 297 63.3
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.6e-100 370.5 293 63.5
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 2.0e-100 370.2 294 62.9
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.0e-100 370.2 300 61.7
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 3.5e-100 369.4 302 61.6
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.5e-100 369.4 300 61.3
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.5e-100 369.0 307 59.6
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.7e-99 367.1 302 61.6
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.7e-99 367.1 297 63.0
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.9e-99 366.3 298 59.7
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.9e-99 366.3 298 59.7
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 3.8e-99 365.9 288 63.9
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.5e-99 365.2 302 61.3
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.9e-98 363.6 339 59.3
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.2e-98 362.5 302 61.3
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 5.5e-98 362.1 357 52.9
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 7.2e-98 361.7 295 59.0
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 9.4e-98 361.3 296 60.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 2.7e-97 359.8 305 60.7
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.0e-96 357.8 294 60.2
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.0e-96 356.3 295 62.7
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.6e-95 353.2 296 59.8
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 2.6e-95 353.2 334 55.1
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.3e-95 352.8 294 59.9
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 9.7e-95 351.3 306 58.5
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 9.1e-93 344.7 275 61.5
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 5.0e-91 339.0 268 62.3
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.5e-90 337.4 297 57.9
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 1.9e-90 337.0 338 53.6
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.7e-86 322.8 294 59.2
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 6.3e-86 322.0 299 56.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 8.3e-86 321.6 294 60.2
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 8.3e-86 321.6 299 53.2
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 2.3e-83 313.5 293 54.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.9e-83 313.2 308 54.2
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 8.6e-83 311.6 293 57.0
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.3e-78 297.7 265 56.2
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.3e-75 287.7 307 49.2
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.3e-74 282.7 269 54.3
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 7.5e-71 271.9 281 50.2
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 3.9e-67 259.6 225 60.0
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.6e-65 253.1 201 64.2
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 4.4e-63 246.1 346 41.0
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.2e-57 228.0 201 61.2
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.6e-57 227.6 291 39.2
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 4.0e-56 223.0 295 44.4
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 6.8e-56 222.2 293 41.6
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 6.8e-56 222.2 291 38.5
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.5e-55 218.8 170 62.4
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.9e-53 214.2 291 37.5
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.7e-51 207.6 267 40.4
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 6.0e-44 182.6 186 50.0
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 2.5e-42 177.2 233 44.2
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 5.3e-40 169.5 123 70.7
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 5.3e-40 169.5 123 70.7
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 6.0e-36 156.0 124 71.8
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.3e-33 148.3 73 94.5
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 4.0e-32 143.3 86 82.6
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 2.0e-31 141.0 77 83.1
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.4e-31 140.2 76 86.8
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.5e-28 130.2 118 52.5
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.8e-27 127.9 284 29.2
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.3e-27 127.5 122 62.3
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.1e-25 119.0 68 79.4
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 4.0e-24 116.7 110 53.6
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 8.4e-22 109.0 58 91.4
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.3e-19 101.7 62 75.8
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.0e-19 100.5 100 51.0
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 8.7e-19 99.0 89 52.8
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.7e-17 93.6 82 53.7
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 4.0e-16 90.1 92 56.5
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.7e-10 69.7 177 30.5
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 4.8e-09 66.6 48 62.5
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 6.9e-08 62.8 44 63.6
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.3e-06 58.5 33 69.7
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 1.3e-06 58.5 33 69.7
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 1.3e-06 58.5 33 69.7
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.2e-06 57.8 33 69.7
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 5.0e-06 56.6 39 64.1
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.5e-06 56.2 60 48.3


User provided reference genes

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