Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 3.8e-125 451.4 218 100.0
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 1.0e-122 443.4 228 95.6
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 1.0e-122 443.4 228 95.6
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 3.4e-121 438.3 228 93.9
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 1.1e-119 433.3 228 92.5
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-119 432.2 228 92.1
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.4e-104 380.9 228 80.3
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.2e-103 378.6 228 80.3
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 9.2e-103 377.1 202 90.6
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 5.0e-101 371.3 228 79.4
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.8e-98 362.8 228 76.3
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 4.4e-97 358.2 228 76.8
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.7e-96 356.3 229 74.7
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.8e-91 339.0 220 74.5
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.6e-81 305.8 190 72.1
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-79 300.4 189 73.5
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.1e-79 298.5 200 68.5
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.1e-74 283.9 188 67.0
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 1.4e-74 283.5 198 65.2
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.4e-74 283.5 190 69.5
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.4e-74 282.7 188 71.3
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-74 282.7 188 71.3
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.4e-74 282.7 188 71.3
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 6.9e-74 281.2 187 67.4
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 8.9e-74 280.8 188 66.5
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 8.9e-74 280.8 188 66.5
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 8.9e-74 280.8 188 66.5
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.6e-73 279.3 186 66.1
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 3.4e-73 278.9 198 64.1
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 5.8e-73 278.1 188 64.9
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 5.8e-73 278.1 211 62.1
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 7.6e-73 277.7 188 65.4
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 2.2e-72 276.2 188 70.7
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 2.2e-72 276.2 188 70.7
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 4.9e-72 275.0 188 66.5
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 6.4e-72 274.6 187 65.8
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 6.4e-72 274.6 188 63.3
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 8.4e-72 274.2 183 71.0
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 8.4e-72 274.2 187 64.7
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 1.9e-71 273.1 187 64.2
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.9e-71 273.1 186 66.1
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 2.4e-71 272.7 188 63.8
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 4.2e-71 271.9 190 64.2
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 5.4e-71 271.6 191 62.8
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 7.1e-71 271.2 187 63.6
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 1.6e-70 270.0 188 63.8
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 3.5e-70 268.9 188 65.4
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 4.6e-70 268.5 188 64.4
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 4.6e-70 268.5 188 63.3
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 4.6e-70 268.5 183 66.7
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 1.0e-69 267.3 188 62.8
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 1.3e-69 266.9 188 63.3
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.3e-69 266.9 189 64.0
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.3e-69 266.9 176 67.6
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.7e-69 266.5 217 58.1
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 1.1e-68 263.8 188 63.3
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.9e-68 263.1 191 60.2
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 2.5e-68 262.7 188 62.2
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.3e-68 262.3 188 63.8
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.3e-68 261.9 188 61.7
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 5.6e-68 261.5 188 62.8
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 7.3e-68 261.2 189 61.4
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 9.6e-68 260.8 187 63.6
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.6e-67 260.0 188 61.7
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 3.6e-67 258.8 188 62.8
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 4.8e-67 258.5 220 56.4
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 6.2e-67 258.1 188 61.7
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.1e-66 257.3 193 60.1
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 1.4e-66 256.9 188 61.7
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 3.1e-66 255.8 188 60.6
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.1e-66 255.8 185 63.8
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 4.0e-66 255.4 188 60.6
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 4.0e-66 255.4 188 60.1
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 4.0e-66 255.4 188 60.1
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.0e-66 255.4 188 60.6
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 4.0e-66 255.4 188 60.1
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 5.3e-66 255.0 188 61.7
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 6.9e-66 254.6 188 60.1
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 6.9e-66 254.6 178 64.6
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 9.0e-66 254.2 188 60.1
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.2e-65 253.8 186 61.8
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-65 253.1 188 59.6
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 2.0e-65 253.1 178 65.2
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 2.6e-65 252.7 178 62.4
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 2.6e-65 252.7 188 61.2
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 3.4e-65 252.3 188 59.0
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 7.6e-65 251.1 168 67.9
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 7.6e-65 251.1 188 60.1
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 9.9e-65 250.8 188 59.6
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 9.9e-65 250.8 189 59.8
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 9.9e-65 250.8 185 61.6
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.3e-64 250.4 188 59.6
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 3.8e-64 248.8 192 59.9
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 4.9e-64 248.4 188 58.0
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.9e-64 248.4 188 58.5
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 6.4e-64 248.1 187 58.8
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-63 247.3 190 59.5
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 1.4e-63 246.9 189 60.3
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 1.4e-63 246.9 188 60.1
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 2.4e-63 246.1 189 60.3
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 7.1e-63 244.6 180 61.1
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.7e-62 242.7 190 56.8
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 3.5e-62 242.3 188 56.4
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 7.9e-62 241.1 188 55.9
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 2.3e-61 239.6 178 60.1
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 3.9e-61 238.8 196 57.7
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.7e-61 238.0 206 54.9
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 8.7e-61 237.7 178 59.6
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-60 236.9 178 59.0
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 9.6e-60 234.2 187 57.8
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 2.1e-59 233.0 178 57.9
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.8e-59 232.6 189 56.1
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.8e-59 232.6 223 52.0
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-59 232.3 212 63.7
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-58 229.9 191 59.7
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 2.4e-58 229.6 188 55.3
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 4.0e-58 228.8 204 63.2
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.4e-57 225.7 178 55.6
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 5.8e-57 224.9 187 55.6
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 5.8e-57 224.9 178 56.7
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 7.6e-57 224.6 247 45.3
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-55 220.7 197 53.3
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 2.4e-55 219.5 188 55.9
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 4.2e-55 218.8 198 62.6
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 7.1e-55 218.0 189 55.6
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 3.5e-54 215.7 194 51.0
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 4.6e-54 215.3 177 57.1
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 2.3e-53 213.0 200 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 7.4e-52 208.0 188 50.5
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.1e-51 206.5 180 63.3
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 4.0e-50 202.2 169 56.2
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.2e-49 200.7 164 56.1
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-49 199.9 151 62.3
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 3.4e-49 199.1 174 52.9
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 3.8e-48 195.7 137 62.0
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 4.9e-48 195.3 188 51.1
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 5.5e-47 191.8 144 60.4
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.7e-46 189.5 142 56.3
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.0e-45 187.6 162 58.0
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.1e-45 185.3 119 70.6
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.1e-43 179.9 188 47.9
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 1.8e-42 176.8 177 46.9
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-38 163.7 118 60.2
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 3.6e-38 162.5 111 65.8
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-32 144.4 75 93.3
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.9e-31 140.2 178 41.6
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 7.9e-30 134.8 200 38.0
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-28 131.0 156 48.1
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 9.7e-28 127.9 149 49.0
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.7e-27 127.1 197 37.1
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-26 123.6 74 83.8
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 7.7e-25 118.2 96 53.1
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.2e-23 112.8 70 71.4
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.6e-22 110.5 82 58.5
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.9e-21 105.9 77 58.4
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.1e-20 104.4 215 33.0
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.7e-19 100.5 65 61.5
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 4.8e-19 99.0 65 60.0
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.4e-18 97.4 64 62.5
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.8e-18 97.1 68 61.8
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 2.9e-16 89.7 57 63.2
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 1.9e-15 87.0 44 90.9
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.5e-15 86.7 153 33.3
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 3.0e-13 79.7 162 30.9
C08p38820 Brassica napus HOM05D000481 ORTHO05D000471 4.0e-13 79.3 85 54.1
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 8.2e-11 71.6 52 53.8
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 5.9e-09 65.5 40 62.5
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.8e-08 62.8 46 65.2


User provided reference genes

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