Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 3.6e-114 414.8 196 100.0
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 9.1e-110 400.2 212 91.5
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 9.1e-110 400.2 212 91.5
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 1.6e-106 389.4 212 89.2
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 2.7e-106 388.7 212 88.7
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 5.2e-105 384.4 212 88.2
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 6.3e-103 377.5 212 86.8
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-102 376.7 212 85.4
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-102 376.7 212 85.4
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 4.5e-101 371.3 212 84.4
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 4.5e-101 371.3 212 84.4
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.7e-98 361.3 212 82.1
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.1e-94 348.2 212 78.8
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 3.0e-89 332.0 213 75.6
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 5.2e-89 331.3 213 75.1
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.5e-88 329.7 213 75.1
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.0e-88 329.3 213 74.6
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.3e-87 326.6 213 74.6
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 5.4e-86 321.2 213 72.3
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.0e-85 319.3 215 72.1
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.1e-83 313.5 213 73.7
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.0e-81 307.0 214 70.1
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 2.3e-81 305.8 222 68.0
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 1.4e-78 296.6 214 69.2
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.3e-76 290.0 213 64.3
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-75 286.6 272 55.5
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-74 283.1 222 66.2
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 5.2e-65 251.5 163 76.1
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.4e-62 243.4 165 72.7
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.0e-60 235.7 174 64.4
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 3.0e-60 235.7 215 55.3
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.1e-59 233.8 178 62.4
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 3.3e-59 232.3 208 54.3
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 4.3e-59 231.9 197 55.8
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 5.6e-59 231.5 185 60.0
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 7.3e-59 231.1 177 58.2
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 9.5e-59 230.7 177 62.7
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.6e-58 229.9 177 61.0
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.6e-58 229.9 179 60.3
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 2.1e-58 229.6 178 59.0
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.1e-58 229.6 206 55.3
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 2.8e-58 229.2 178 60.1
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.6e-58 228.8 190 55.3
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 6.2e-58 228.0 179 58.7
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 8.1e-58 227.6 178 57.3
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 8.1e-58 227.6 193 55.4
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 8.1e-58 227.6 186 59.7
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 1.1e-57 227.3 196 55.1
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 1.4e-57 226.9 196 55.1
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.8e-57 226.5 178 59.0
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 1.8e-57 226.5 193 54.4
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.0e-57 225.3 192 54.2
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 5.2e-57 224.9 193 54.4
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 8.9e-57 224.2 185 57.8
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.2e-56 223.8 193 55.4
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 1.5e-56 223.4 193 55.4
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.5e-56 223.4 196 54.6
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.5e-56 223.4 178 59.6
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.0e-56 223.0 192 54.2
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 2.0e-56 223.0 178 57.3
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 3.4e-56 222.2 178 58.4
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 3.4e-56 222.2 174 58.6
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 4.4e-56 221.9 193 54.9
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 5.8e-56 221.5 178 56.7
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.8e-56 221.5 184 56.5
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 5.8e-56 221.5 177 57.6
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 7.6e-56 221.1 180 60.0
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 9.9e-56 220.7 178 56.7
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 9.9e-56 220.7 178 56.7
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.3e-55 220.3 180 57.2
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.7e-55 219.9 178 55.6
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 1.7e-55 219.9 178 57.3
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.7e-55 219.9 193 54.9
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 1.7e-55 219.9 177 57.6
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.2e-55 219.5 178 57.9
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 2.9e-55 219.2 192 52.6
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 2.9e-55 219.2 187 55.6
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 3.8e-55 218.8 208 53.8
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 3.8e-55 218.8 177 57.1
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.4e-55 218.0 178 55.6
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 6.4e-55 218.0 188 52.7
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 8.4e-55 217.6 178 57.3
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 8.4e-55 217.6 192 51.6
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 8.4e-55 217.6 176 58.0
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 1.4e-54 216.9 192 52.1
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.4e-54 216.9 176 56.2
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 2.4e-54 216.1 183 54.6
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 5.4e-54 214.9 192 51.6
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 5.4e-54 214.9 192 51.6
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 5.4e-54 214.9 183 55.7
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 5.4e-54 214.9 185 54.1
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 9.2e-54 214.2 209 52.6
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.1e-53 213.0 223 48.9
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.7e-53 212.6 206 47.1
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.7e-53 212.6 205 50.2
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.5e-53 212.2 193 52.8
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.5e-53 212.2 179 57.0
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.5e-53 212.2 180 52.8
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 4.6e-53 211.8 178 55.1
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 6.0e-53 211.5 177 53.7
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 6.0e-53 211.5 174 58.0
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 6.0e-53 211.5 178 55.6
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-52 210.7 192 51.6
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.3e-52 210.3 176 55.7
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-52 210.3 180 56.1
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 1.7e-52 209.9 186 53.2
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.7e-52 209.9 178 56.2
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 5.1e-52 208.4 179 55.9
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 1.1e-51 207.2 180 56.1
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 3.3e-51 205.7 146 67.1
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.7e-50 201.8 218 45.9
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.8e-49 199.9 168 56.0
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.1e-49 199.1 177 53.7
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 4.0e-49 198.7 174 52.9
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 6.9e-49 198.0 175 52.0
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 6.9e-49 198.0 175 52.0
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 6.9e-49 198.0 175 52.0
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 3.4e-48 195.7 181 50.8
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 3.4e-48 195.7 181 50.8
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 5.8e-48 194.9 185 53.0
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.2e-47 193.0 150 62.7
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 2.9e-47 192.6 177 52.0
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 3.8e-47 192.2 179 52.0
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.4e-46 190.3 177 52.0
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.4e-46 189.5 130 66.2
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 9.3e-46 187.6 160 53.1
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 4.6e-45 185.3 177 51.4
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 8.7e-44 181.0 176 47.7
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 7.3e-43 177.9 159 53.5
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 7.3e-43 177.9 136 62.5
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 6.2e-42 174.9 179 47.5
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.1e-41 172.6 188 44.7
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.0e-40 169.9 145 55.9
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 4.5e-40 168.7 146 54.8
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 5.8e-40 168.3 180 48.9
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.0e-36 157.5 204 43.6
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 1.3e-36 157.1 213 41.8
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.1e-30 137.5 98 63.3
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.2e-30 135.6 104 59.6
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.1e-28 128.6 96 63.5
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.5e-27 126.3 183 40.4
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.8e-25 120.2 81 65.4
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.0e-23 114.4 183 35.5
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 4.9e-23 112.1 150 40.7
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 4.3e-19 99.0 135 40.0
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.8e-18 96.3 133 39.8
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 4.8e-18 95.5 133 39.1
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 4.8e-18 95.5 133 39.1
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 6.3e-18 95.1 177 33.3
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 4.1e-17 92.4 72 54.2
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 9.0e-17 91.3 163 32.5
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 2.7e-13 79.7 85 45.9
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.1e-13 78.6 70 55.7
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.0e-12 77.8 77 49.4
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.0e-12 77.8 62 58.1
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.8e-12 77.0 69 52.2
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 5.1e-12 75.5 182 30.8
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.5e-11 73.2 51 58.8
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 4.1e-09 65.9 137 30.7
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 4.1e-09 65.9 137 30.7
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 9.1e-09 64.7 62 48.4
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 4.5e-08 62.4 135 31.9
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 7.7e-08 61.6 134 31.3
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 1.3e-07 60.8 39 64.1
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.9e-07 59.7 59 40.7


User provided reference genes

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