Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29468 Brassica carinata HOM05D008433 ORTHO05D009918 4.4e-86 321.2 160 100.0
BcaC02g07009 Brassica carinata HOM05D008433 ORTHO05D009918 3.1e-76 288.5 145 100.0
C04p72390 Brassica napus HOM05D008433 ORTHO05D009918 2.9e-69 265.4 162 87.0
BolC4t28725H Brassica oleracea HOM05D008433 ORTHO05D009918 2.9e-69 265.4 162 87.0
BcaC02g07007 Brassica carinata HOM05D008433 ORTHO05D009918 1.9e-68 262.7 162 86.4
A04p34600 Brassica napus HOM05D008433 ORTHO05D009918 2.7e-67 258.8 162 85.2
BraA04t18918Z Brassica rapa HOM05D008433 ORTHO05D009918 2.7e-67 258.8 162 85.2
Thhalv10001667m.g Eutrema salsugineum HOM05D008433 ORTHO05D009918 2.1e-56 222.6 165 75.2
AL4G46200 Arabidopsis lyrata HOM05D008433 ORTHO05D009918 3.6e-56 221.9 164 75.0
CARHR142080 Cardamine hirsuta HOM05D008433 ORTHO05D009918 3.4e-54 215.3 164 72.0
A05p01070 Brassica napus HOM05D000145 ORTHO05D013968 8.3e-53 210.7 165 70.3
BraA05t19107Z Brassica rapa HOM05D000145 ORTHO05D013968 8.3e-53 210.7 165 70.3
Carub.0004s2944 Capsella rubella HOM05D008433 ORTHO05D009918 1.4e-52 209.9 163 71.2
AT2G46735 Arabidopsis thaliana HOM05D008433 ORTHO05D009918 1.9e-52 209.5 165 70.3
BolC4t21776H Brassica oleracea HOM05D000145 ORTHO05D013968 9.2e-52 207.2 165 69.1
BcaC02g12646 Brassica carinata HOM05D008433 ORTHO05D009918 9.9e-46 187.2 165 63.0
C04p01210 Brassica napus HOM05D000145 ORTHO05D013968 9.9e-46 187.2 165 63.6
BcaNung03892 Brassica carinata HOM05D008433 ORTHO05D009918 3.9e-42 175.3 162 64.2
Aa31LG1G28120 Aethionema arabicum HOM05D008433 ORTHO05D009918 2.7e-35 152.5 159 57.2
BcaC02g07008 Brassica carinata HOM05D008433 ORTHO05D009918 3.5e-35 152.1 110 79.1
AUR62004552 Chenopodium quinoa HOM05D008433 ORTHO05D009918 1.0e-13 80.9 145 37.2
THA.LOC104817395 Tarenaya hassleriana HOM05D008433 ORTHO05D009918 2.2e-13 79.7 172 33.7
Cfa004661 Carpinus fangiana HOM05D008433 ORTHO05D009918 4.9e-13 78.6 174 31.0
Cpa.g.sc141.14 Carica papaya HOM05D008433 ORTHO05D009918 6.5e-13 78.2 108 43.5
FAN06G2608 Fragaria x ananassa HOM05D013717 ORTHO05D009918 2.5e-12 76.3 134 39.6
AUR62022666 Chenopodium quinoa HOM05D008433 ORTHO05D009918 7.1e-12 74.7 139 38.1
FAN03G0231 Fragaria x ananassa HOM05D013717 ORTHO05D009918 7.1e-12 74.7 135 39.3
Phvul.009G257200 Phaseolus vulgaris HOM05D008433 ORTHO05D009918 7.1e-12 74.7 137 35.8
FAN10G3359 Fragaria x ananassa HOM05D013717 ORTHO05D009918 4.6e-11 72.0 136 38.2
FAN10G3789 Fragaria x ananassa HOM05D013717 ORTHO05D009918 4.6e-11 72.0 134 38.8
Duzib138G0947 Durio zibethinus HOM05D008433 ORTHO05D009918 1.0e-10 70.9 115 40.9
Manes.05G017500 Manihot esculenta HOM05D008433 ORTHO05D009918 1.3e-10 70.5 159 33.3
FAN01G0488 Fragaria x ananassa HOM05D013717 ORTHO05D009918 1.8e-10 70.1 74 50.0
Ah.05g179030 Amaranthus hybridus HOM05D008433 ORTHO05D009918 3.0e-10 69.3 173 31.2
TWI14G1180 Tripterygium wilfordii HOM05D008433 ORTHO05D009918 3.0e-10 69.3 114 37.7
Thecc.01G334700 Theobroma cacao HOM05D008433 ORTHO05D009918 3.9e-10 68.9 84 46.4
CANSAT56G3323 Cannabis sativa HOM05D013717 ORTHO05D009918 8.7e-10 67.8 133 36.8
TAR629G1417 Trochodendron aralioides HOM05D008433 ORTHO05D009918 1.5e-09 67.0 143 35.0
Glyma.19G259100 Glycine max HOM05D008433 ORTHO05D009918 3.3e-09 65.9 97 45.4
Prupe.2G196100 Prunus persica HOM05D013717 ORTHO05D009918 3.3e-09 65.9 142 35.9
Gohir.A11G100200 Gossypium hirsutum HOM05D008433 ORTHO05D009918 7.4e-09 64.7 79 46.8
Potri.002G178100 Populus trichocarpa HOM05D008433 ORTHO05D009918 7.4e-09 64.7 107 37.4
Nn1g00412 Nelumbo nucifera HOM05D033573 ORTHO05D009918 1.3e-08 63.9 81 40.7
Sabra02G0135500 Salix brachista HOM05D008433 ORTHO05D009918 2.2e-08 63.2 85 42.4
Sed0019953 Sechium edule HOM05D029570 ORTHO05D009918 2.2e-08 63.2 142 35.9
Sc26g0000460 Simmondsia chinensis HOM05D008433 ORTHO05D009918 2.2e-08 63.2 87 43.7
TPR.G22611 Trifolium pratense HOM05D008433 ORTHO05D009918 2.2e-08 63.2 120 35.8
CiPaw.01G081400 Carya illinoinensis HOM05D008433 ORTHO05D009918 3.7e-08 62.4 125 31.2
Gohir.D11G104900 Gossypium hirsutum HOM05D008433 ORTHO05D009918 3.7e-08 62.4 79 43.0
Gorai.007G112200 Gossypium raimondii HOM05D008433 ORTHO05D009918 3.7e-08 62.4 79 43.0
Oeu046652.1 Olea europaea HOM05D008433 ORTHO05D009918 6.3e-08 61.6 125 33.6
Lj1g0005818 Lotus japonicus HOM05D008433 ORTHO05D009918 8.2e-08 61.2 80 47.5
MBI12_g42093_MAGBIO Magnolia biondii HOM05D008433 ORTHO05D009918 8.2e-08 61.2 103 37.9
Nitab4.5_0003094g0050 Nicotiana tabacum HOM05D018587 ORTHO05D009918 1.4e-07 60.5 90 46.7
Actinidia28092 Actinidia chinensis HOM05D013717 ORTHO05D009918 3.1e-07 59.3 153 32.0
CDE06G1173 Ceratophyllum demersum HOM05D051512 ORTHO05D009918 3.1e-07 59.3 165 29.7
Hma1.2p1_1697F.1_g298100 Hydrangea macrophylla HOM05D008433 ORTHO05D009918 4.1e-07 58.9 131 33.6
VMungo1309G0842 Vigna mungo HOM05D008433 ORTHO05D009918 4.1e-07 58.9 105 39.0
RcHm_v2.0_Chr1g0360901 Rosa chinensis HOM05D013717 ORTHO05D009918 5.3e-07 58.5 132 32.6
ECA236G4657 Erigeron canadensis HOM05D000145 ORTHO05D000115 6.9e-07 58.2 76 43.4
Rhsim01G0179000 Rhododendron simsii HOM05D008433 ORTHO05D009918 6.9e-07 58.2 131 29.0
Atru.chr5.753 Acer truncatum HOM05D008433 ORTHO05D009918 9.0e-07 57.8 157 30.6
Aqoxy3G00807 Aquilegia oxysepala HOM05D008433 ORTHO05D009918 1.5e-06 57.0 77 46.8
CDE04G3055 Ceratophyllum demersum HOM05D051512 ORTHO05D009918 1.5e-06 57.0 76 43.4
ClCG06G002750 Citrullus lanatus HOM05D029570 ORTHO05D009918 2.6e-06 56.2 176 29.5
Nitab4.5_0002053g0010 Nicotiana tabacum HOM05D018587 ORTHO05D009918 4.5e-06 55.5 114 33.3
Oeu015062.1 Olea europaea HOM05D008433 ORTHO05D009918 5.9e-06 55.1 102 36.3
Peaxi162Scf00087g00044 Petunia axillaris HOM05D018587 ORTHO05D009918 5.9e-06 55.1 83 44.6
ATR0579G055 Amborella trichopoda HOM05D032616 ORTHO05D031091 7.7e-06 54.7 125 32.0
Lalb_Chr18g0044671 Lupinus albus HOM05D008433 ORTHO05D009918 1.0e-05 54.3 115 33.0


User provided reference genes

Program Settings