Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 6.3e-49 197.2 105 100.0
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 5.1e-43 177.6 105 90.5
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 5.1e-43 177.6 105 90.5
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.1e-40 166.8 105 87.6
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 9.1e-40 166.8 105 87.6
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 3.4e-39 164.9 103 88.3
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 3.4e-39 164.9 103 88.3
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 3.4e-39 164.9 103 88.3
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 5.9e-39 164.1 103 86.4
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 5.9e-39 164.1 103 86.4
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 7.7e-39 163.7 103 86.4
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 7.7e-39 163.7 103 87.4
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 1.7e-38 162.5 103 85.4
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 3.8e-38 161.4 103 88.3
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 8.5e-38 160.2 103 87.4
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 1.1e-37 159.8 103 84.5
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 1.4e-37 159.5 103 83.5
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 1.9e-37 159.1 103 83.5
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 2.5e-37 158.7 103 84.5
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 3.2e-37 158.3 104 85.6
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 1.3e-30 136.3 104 77.9
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.2e-12 76.6 87 54.0
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 1.8e-11 72.8 96 46.9
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.8e-11 72.8 106 44.3
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 4.0e-11 71.6 112 48.2
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 5.2e-11 71.2 94 41.5
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 6.8e-11 70.9 98 44.9
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 2.0e-10 69.3 99 46.5
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 2.0e-10 69.3 111 38.7
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 2.6e-10 68.9 97 49.5
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.6e-10 68.9 72 51.4
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 2.6e-10 68.9 112 38.4
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 5.7e-10 67.8 74 48.6
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 5.7e-10 67.8 80 53.8
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 7.5e-10 67.4 97 47.4
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 7.5e-10 67.4 93 50.5
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 9.8e-10 67.0 86 48.8
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 9.8e-10 67.0 76 50.0
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 1.3e-09 66.6 89 48.3
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.3e-09 66.6 96 46.9
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.3e-09 66.6 82 52.4
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 1.3e-09 66.6 82 47.6
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 1.7e-09 66.2 99 43.4
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 2.2e-09 65.9 71 50.7
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 2.2e-09 65.9 96 43.8
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 2.8e-09 65.5 67 58.2
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 2.8e-09 65.5 90 47.8
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 3.7e-09 65.1 96 45.8
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 4.9e-09 64.7 95 46.3
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 6.3e-09 64.3 99 38.4
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 6.3e-09 64.3 72 48.6
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 8.3e-09 63.9 97 46.4
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 8.3e-09 63.9 89 43.8
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 1.1e-08 63.5 97 40.2
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 1.4e-08 63.2 80 48.8
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 1.4e-08 63.2 92 41.3
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 1.4e-08 63.2 79 48.1
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 1.4e-08 63.2 88 44.3
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 1.8e-08 62.8 97 41.2
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 1.8e-08 62.8 88 48.9
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 2.4e-08 62.4 96 42.7
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 2.4e-08 62.4 61 54.1
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 3.1e-08 62.0 54 64.8
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 7.0e-08 60.8 49 65.3
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 7.0e-08 60.8 84 50.0
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 7.0e-08 60.8 104 43.3
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 9.2e-08 60.5 84 44.0
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 9.2e-08 60.5 97 39.2
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 9.2e-08 60.5 79 46.8
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 9.2e-08 60.5 80 50.0
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 9.2e-08 60.5 90 48.9
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 1.2e-07 60.1 82 46.3
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 1.2e-07 60.1 69 46.4
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 1.6e-07 59.7 86 44.2
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 1.6e-07 59.7 73 43.8
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 1.6e-07 59.7 100 43.0
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.6e-07 59.7 98 41.8
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 2.0e-07 59.3 87 41.4
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 2.7e-07 58.9 82 42.7
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 3.5e-07 58.5 98 40.8
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 3.5e-07 58.5 98 40.8
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 4.5e-07 58.2 88 44.3
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 4.5e-07 58.2 99 40.4
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.0e-06 57.0 80 46.2
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 1.0e-06 57.0 83 43.4
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 1.3e-06 56.6 92 41.3
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.3e-06 56.6 93 41.9
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 1.7e-06 56.2 82 41.5
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 2.3e-06 55.8 59 50.8
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 2.9e-06 55.5 92 41.3
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 2.9e-06 55.5 102 38.2
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 3.8e-06 55.1 108 37.0
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 3.8e-06 55.1 89 38.2
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 5.0e-06 54.7 64 45.3
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 6.6e-06 54.3 96 39.6
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 6.6e-06 54.3 87 40.2
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 6.6e-06 54.3 73 45.2
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 6.6e-06 54.3 55 49.1
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 8.6e-06 53.9 87 41.4
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 8.6e-06 53.9 82 42.7
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 8.6e-06 53.9 59 47.5


User provided reference genes

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