Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29451 Brassica carinata HOM05D004590 ORTHO05D006056 1.9e-170 602.4 309 100.0
C04p72730 Brassica napus HOM05D004590 ORTHO05D006056 3.3e-154 548.5 310 91.9
BolC4t28754H Brassica oleracea HOM05D004590 ORTHO05D006056 1.6e-153 546.2 310 91.6
BcaC02g06968 Brassica carinata HOM05D004590 ORTHO05D006056 3.1e-152 542.0 308 91.6
BcaC02g12568 Brassica carinata HOM05D004590 ORTHO05D006056 1.1e-144 516.9 310 87.1
BolC4t21692H Brassica oleracea HOM05D004590 ORTHO05D006056 1.1e-144 516.9 310 87.1
C04p00580 Brassica napus HOM05D004590 ORTHO05D006056 5.2e-144 514.6 310 87.1
A05p00540 Brassica napus HOM05D004590 ORTHO05D006056 8.9e-144 513.8 311 86.8
BcaB02g08783 Brassica carinata HOM05D004590 ORTHO05D006056 4.4e-143 511.5 310 86.5
Thhalv10001759m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 2.2e-142 509.2 310 85.2
BraA05t19052Z Brassica rapa HOM05D004590 ORTHO05D006056 1.4e-141 506.5 311 85.9
Sp4g29300 Schrenkiella parvula HOM05D004590 ORTHO05D006056 2.3e-139 499.2 309 83.8
BcaB01g03170 Brassica carinata HOM05D004590 ORTHO05D006056 5.8e-135 484.6 310 82.9
A03p25930 Brassica napus HOM05D004590 ORTHO05D006056 1.2e-132 476.9 310 81.3
CARHR142760 Cardamine hirsuta HOM05D004590 ORTHO05D006056 3.5e-132 475.3 310 82.3
BolC3t15444H Brassica oleracea HOM05D004590 ORTHO05D006056 1.4e-128 463.4 316 78.8
AL4G46920 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 5.2e-128 461.5 310 80.6
BraA03t11810Z Brassica rapa HOM05D004590 ORTHO05D006056 1.5e-127 459.9 310 79.4
AT2G47360 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 6.4e-126 454.5 311 80.1
C03p30930 Brassica napus HOM05D004590 ORTHO05D006056 2.8e-121 439.1 310 76.8
THA.LOC104802151 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 1.1e-96 357.5 310 65.5
AL251U10010 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 7.4e-82 308.1 307 59.9
Atru.chr5.984 Acer truncatum HOM05D004590 ORTHO05D006056 1.7e-65 253.8 284 50.0
Aa31LG10G16310 Aethionema arabicum HOM05D004590 ORTHO05D006056 1.0e-62 244.6 286 52.8
AL5G45160 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 1.3e-62 244.2 291 54.6
Thecc.01G314300 Theobroma cacao HOM05D004590 ORTHO05D006056 2.5e-61 240.0 280 46.4
COL.COLO4_23224 Corchorus olitorius HOM05D004590 ORTHO05D006056 5.5e-61 238.8 280 47.1
BcaC01g05033 Brassica carinata HOM05D004590 ORTHO05D006056 7.2e-61 238.4 148 85.1
Cpa.g.sc18.55 Carica papaya HOM05D004590 ORTHO05D006056 2.7e-60 236.5 279 50.2
Potri.014G119900 Populus trichocarpa HOM05D004590 ORTHO05D006056 1.3e-57 227.6 289 45.7
Dinv10105 Davidia involucrata HOM05D004590 ORTHO05D006056 1.7e-57 227.3 285 47.0
QL12p019662 Quercus lobata HOM05D004590 ORTHO05D006056 1.7e-57 227.3 261 49.8
Ciclev10021487m.g Citrus clementina HOM05D004590 ORTHO05D006056 2.8e-57 226.5 275 45.5
Manes.01G228400 Manihot esculenta HOM05D004590 ORTHO05D006056 8.3e-57 224.9 278 44.6
Duzib133G0018 Durio zibethinus HOM05D004590 ORTHO05D006056 1.8e-56 223.8 266 47.4
Gorai.004G050300 Gossypium raimondii HOM05D004590 ORTHO05D006056 2.0e-55 220.3 286 46.2
Gohir.A08G040600 Gossypium hirsutum HOM05D004590 ORTHO05D006056 4.5e-55 219.2 276 46.7
Gohir.D08G050700 Gossypium hirsutum HOM05D004590 ORTHO05D006056 4.5e-55 219.2 286 46.2
Manes.05G004200 Manihot esculenta HOM05D004590 ORTHO05D006056 1.0e-54 218.0 283 45.9
Sabra14G0088900 Salix brachista HOM05D004590 ORTHO05D006056 6.5e-54 215.3 290 45.2
BcaC02g09006 Brassica carinata HOM05D004590 ORTHO05D006056 8.5e-54 214.9 134 82.1
BolC4t25517H Brassica oleracea HOM05D004590 ORTHO05D006056 8.5e-54 214.9 134 82.1
CiPaw.07G118200 Carya illinoinensis HOM05D004590 ORTHO05D006056 1.5e-53 214.2 277 47.3
FAN04G1151 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.5e-53 214.2 283 45.9
FAN18G0760 Fragaria x ananassa HOM05D004590 ORTHO05D001814 5.5e-53 212.2 312 42.6
Prupe.8G266000 Prunus persica HOM05D004590 ORTHO05D006056 2.1e-52 210.3 275 46.5
FAN18G0138 Fragaria x ananassa HOM05D004590 ORTHO05D006056 4.7e-52 209.1 283 45.6
TWI75G0806 Tripterygium wilfordii HOM05D004590 ORTHO05D006056 4.7e-52 209.1 290 42.4
Gorai.007G122400 Gossypium raimondii HOM05D004590 ORTHO05D006056 1.0e-51 208.0 258 47.3
Carub.0004s3008 Capsella rubella HOM05D004590 ORTHO05D006056 1.4e-51 207.6 151 72.2
CANSAT25G1025 Cannabis sativa HOM05D004590 ORTHO05D006056 2.3e-51 206.8 296 45.3
DCAR_002892 Daucus carota HOM05D004590 ORTHO05D006056 2.0e-50 203.8 263 46.4
vmacro02401 Vaccinium macrocarpon HOM05D004590 ORTHO05D006056 2.0e-50 203.8 278 43.9
Ca_10279_v3 Cicer arietinum L. HOM05D004590 ORTHO05D006056 4.4e-50 202.6 288 42.0
Gohir.D11G113800 Gossypium hirsutum HOM05D004590 ORTHO05D006056 5.7e-50 202.2 258 46.5
Sabra02G0161400 Salix brachista HOM05D004590 ORTHO05D006056 7.5e-50 201.8 268 45.1
Glyma.10G012400 Glycine max HOM05D004590 ORTHO05D006056 9.8e-50 201.4 282 45.4
Potri.002G195400 Populus trichocarpa HOM05D004590 ORTHO05D006056 9.8e-50 201.4 268 43.7
FAN08G1928 Fragaria x ananassa HOM05D004590 ORTHO05D006056 1.3e-49 201.1 284 45.4
Actinidia25853 Actinidia chinensis HOM05D004590 ORTHO05D006056 1.7e-49 200.7 265 44.9
CiPaw.07G118100 Carya illinoinensis HOM05D004590 ORTHO05D006056 2.4e-48 196.8 286 42.7
SalBow2G1668 Salvia bowleyana HOM05D004590 ORTHO05D001814 2.4e-48 196.8 264 45.5
MD03G1293400 Malus domestica HOM05D004590 ORTHO05D006056 3.1e-48 196.4 272 46.3
Glyma.02G011900 Glycine max HOM05D004590 ORTHO05D006056 5.4e-48 195.7 277 44.0
Eucgr.H01008 Eucalyptus grandis HOM05D004590 ORTHO05D006056 2.0e-47 193.7 283 42.8
Phvul.007G213800 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 2.7e-47 193.4 278 43.9
Eucgr.L03092 Eucalyptus grandis HOM05D004590 ORTHO05D006056 4.5e-47 192.6 283 42.8
PSO210G2446 Papaver somniferum HOM05D004590 ORTHO05D006056 4.5e-47 192.6 279 44.1
Dinv10107 Davidia involucrata HOM05D004590 ORTHO05D006056 5.9e-47 192.2 282 42.9
PSO761G0256 Papaver somniferum HOM05D004590 ORTHO05D006056 1.3e-46 191.0 275 42.9
Haze_05055 Corylus avellana HOM05D004590 ORTHO05D006056 1.7e-46 190.7 269 44.2
VMungo0720G1332 Vigna mungo HOM05D004590 ORTHO05D006056 5.0e-46 189.1 267 45.7
Actinidia17904 Actinidia chinensis HOM05D004590 ORTHO05D006056 1.1e-45 188.0 280 41.1
Cfa005786 Carpinus fangiana HOM05D004590 ORTHO05D006056 1.1e-45 188.0 271 43.9
Lsat_1_v5_gn_9_2700 Lactuca sativa HOM05D004590 ORTHO05D006056 1.5e-45 187.6 269 45.7
CiPaw.08G089200 Carya illinoinensis HOM05D004590 ORTHO05D006056 1.9e-45 187.2 263 46.4
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 2.5e-45 186.8 284 44.4
DCAR_012338 Daucus carota HOM05D004590 ORTHO05D006056 3.3e-45 186.4 263 42.2
DCAR_018295 Daucus carota HOM05D004590 ORTHO05D006056 4.3e-45 186.0 281 41.3
Aqoxy5G02551 Aquilegia oxysepala HOM05D004590 ORTHO05D006056 1.6e-44 184.1 280 40.7
Psat6g161400 Pisum sativum HOM05D004590 ORTHO05D006056 1.6e-44 184.1 267 43.4
Lj5g0007000 Lotus japonicus HOM05D004590 ORTHO05D006056 2.1e-44 183.7 329 38.9
PGR083G0375 Punica granatum HOM05D004590 ORTHO05D006056 1.0e-43 181.4 271 43.2
Lj1C16T8 Lonicera japonica HOM05D004590 ORTHO05D006056 1.8e-43 180.6 268 43.3
Medtr1g086950 Medicago truncatula HOM05D004590 ORTHO05D006056 1.8e-43 180.6 270 42.2
Peaxi162Scf00691g00043 Petunia axillaris HOM05D004590 ORTHO05D006056 2.3e-43 180.3 259 43.2
Glyma.03G220000 Glycine max HOM05D004590 ORTHO05D006056 6.8e-43 178.7 277 42.6
Glyma.19G216900 Glycine max HOM05D004590 ORTHO05D006056 6.8e-43 178.7 268 43.7
HanXRQChr10g0285241 Helianthus annuus HOM05D004590 ORTHO05D006056 6.8e-43 178.7 274 43.4
PGR044G0990 Punica granatum HOM05D004590 ORTHO05D006056 1.5e-42 177.6 296 41.2
C04p39520 Brassica napus HOM05D004590 ORTHO05D006056 2.0e-42 177.2 115 80.0
ECA247G0553 Erigeron canadensis HOM05D001902 ORTHO05D006056 2.6e-42 176.8 282 42.9
Lalb_Chr02g0146851 Lupinus albus HOM05D004590 ORTHO05D006056 2.6e-42 176.8 278 42.1
Migut.N00771 Erythranthe guttata HOM05D004590 ORTHO05D006056 4.4e-42 176.0 285 41.8
Nn4g25589 Nelumbo nucifera HOM05D004590 ORTHO05D006056 7.5e-42 175.3 273 42.9
Thhalv10009368m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 2.2e-41 173.7 274 41.2
MBI19_g07230_MAGBIO Magnolia biondii HOM05D004590 ORTHO05D006056 2.2e-41 173.7 282 39.4
AT1G02570 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 4.9e-41 172.6 267 41.2
CARHR001880 Cardamine hirsuta HOM05D004590 ORTHO05D006056 4.9e-41 172.6 262 42.0
Psat3g019440 Pisum sativum HOM05D004590 ORTHO05D006056 4.9e-41 172.6 264 41.7
Cc01_g21490 Coffea canephora HOM05D004590 ORTHO05D006056 1.1e-40 171.4 311 38.9
Carub.0001s0163 Capsella rubella HOM05D004590 ORTHO05D006056 1.8e-40 170.6 276 40.2
Gohir.A11G109250 Gossypium hirsutum HOM05D004590 ORTHO05D006056 2.4e-40 170.2 210 47.1
Nitab4.5_0007087g0030 Nicotiana tabacum HOM05D004590 ORTHO05D001814 2.4e-40 170.2 268 41.4
Nitab4.5_0000363g0250 Nicotiana tabacum HOM05D004590 ORTHO05D001814 5.4e-40 169.1 269 41.3
BraA10t42408Z Brassica rapa HOM05D004590 ORTHO05D006056 7.0e-40 168.7 258 41.9
Dinv33123 Davidia involucrata HOM05D004590 ORTHO05D006056 7.0e-40 168.7 222 46.8
TPR.G38694 Trifolium pratense HOM05D004590 ORTHO05D006056 7.0e-40 168.7 273 41.0
AL1G11900 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 1.2e-39 167.9 273 40.3
Nitab4.5_0007407g0080 Nicotiana tabacum HOM05D004590 ORTHO05D001814 1.6e-39 167.5 284 39.1
VMungo1383G1848 Vigna mungo HOM05D004590 ORTHO05D006056 2.7e-39 166.8 265 41.5
A10p01300 Brassica napus HOM05D004590 ORTHO05D006056 4.6e-39 166.0 258 40.7
FAN13G0862 Fragaria x ananassa HOM05D004590 ORTHO05D001814 5.9e-39 165.6 269 42.4
Medtr7g109590 Medicago truncatula HOM05D004590 ORTHO05D006056 7.8e-39 165.2 266 40.6
Solyc01g079370.4 Solanum lycopersicum HOM05D004590 ORTHO05D001814 1.0e-38 164.9 256 41.4
Peaxi162Scf00058g02629 Petunia axillaris HOM05D004590 ORTHO05D006056 3.9e-38 162.9 260 40.8
TPR.G4132 Trifolium pratense HOM05D004590 ORTHO05D006056 3.9e-38 162.9 269 40.1
C05p01300 Brassica napus HOM05D004590 ORTHO05D006056 5.0e-38 162.5 258 40.7
Phvul.001G213500 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 5.0e-38 162.5 267 40.1
BolC5t28912H Brassica oleracea HOM05D004590 ORTHO05D006056 1.1e-37 161.4 258 40.7
RcHm_v2.0_Chr7g0241061 Rosa chinensis HOM05D004590 ORTHO05D006056 2.5e-37 160.2 245 42.4
MELO3C017913.2 Cucumis melo HOM05D001902 ORTHO05D001973 3.3e-37 159.8 253 41.5
Aa31LG1G9960 Aethionema arabicum HOM05D004590 ORTHO05D006056 7.3e-37 158.7 267 39.3
Sp1g01590 Schrenkiella parvula HOM05D004590 ORTHO05D006056 7.3e-37 158.7 258 39.1
Sopen06g004240 Solanum pennellii HOM05D004590 ORTHO05D001814 7.3e-37 158.7 258 40.7
Solyc06g009610.1 Solanum lycopersicum HOM05D004590 ORTHO05D001814 1.2e-36 157.9 258 40.7
BcaB03g15770 Brassica carinata HOM05D004590 ORTHO05D006056 2.1e-36 157.1 258 40.3
THA.LOC104815920 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 8.0e-36 155.2 287 36.6
arahy.Tifrunner.gnm1.ann1.3K3C0B Arachis hypogaea HOM05D004590 ORTHO05D006056 1.0e-35 154.8 267 39.0
PGSC0003DMG400007284 Solanum tuberosum HOM05D004590 ORTHO05D006056 1.0e-35 154.8 257 39.7
Oeu008476.1 Olea europaea HOM05D004590 ORTHO05D006056 1.5e-34 151.0 223 40.4
PSO223G0035 Papaver somniferum HOM05D004590 ORTHO05D006056 2.0e-34 150.6 259 41.3
AT1G02575 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 2.9e-33 146.7 262 37.8
Lj1g0007921 Lotus japonicus HOM05D004590 ORTHO05D006056 3.2e-32 143.3 263 39.9
Sed0021092 Sechium edule HOM05D004590 ORTHO05D006056 5.4e-32 142.5 271 36.9
CANSAT25G2756 Cannabis sativa HOM05D004590 ORTHO05D006056 1.2e-31 141.4 272 36.4
Oeu043737.1 Olea europaea HOM05D004590 ORTHO05D006056 1.6e-31 141.0 206 41.7
ClCG10G011450 Citrullus lanatus HOM05D004590 ORTHO05D006056 2.0e-31 140.6 271 38.0
Sopen01g031150 Solanum pennellii HOM05D004590 ORTHO05D006056 6.0e-31 139.0 244 37.3
Eucgr.K03548 Eucalyptus grandis HOM05D004590 ORTHO05D006056 1.7e-30 137.5 256 37.5
Migut.N00928 Erythranthe guttata HOM05D004590 ORTHO05D006056 4.0e-27 126.3 281 34.9
MD03G1293600 Malus domestica HOM05D004590 ORTHO05D006056 2.6e-26 123.6 116 55.2
ClCG09G005050 Citrullus lanatus HOM05D004590 ORTHO05D001814 3.4e-26 123.2 276 34.4
CsaV3_7G030000 Cucumis sativus L. HOM05D004590 ORTHO05D006056 4.9e-25 119.4 275 34.5
PSO210G1746 Papaver somniferum HOM05D004590 ORTHO05D006056 4.9e-25 119.4 163 38.0
SalBow3G0071 Salvia bowleyana HOM05D004590 ORTHO05D006056 6.4e-25 119.0 249 37.8
SalBow3G0439 Salvia bowleyana HOM05D004590 ORTHO05D006056 6.4e-25 119.0 249 37.8
Sed0006535 Sechium edule HOM05D004590 ORTHO05D006056 3.2e-24 116.7 275 33.1
MELO3C015920.2 Cucumis melo HOM05D004590 ORTHO05D006056 1.2e-23 114.8 273 33.0
RcHm_v2.0_Chr7g0241031 Rosa chinensis HOM05D004590 ORTHO05D006056 1.2e-23 114.8 116 51.7
Actinidia20991 Actinidia chinensis HOM05D000063 ORTHO05D001814 1.1e-19 101.7 135 43.0
Nitab4.5_0003540g0150 Nicotiana tabacum HOM05D004590 ORTHO05D006056 1.8e-19 100.9 118 44.9
HPP92_001238 Vanilla planifolia HOM05D004590 ORTHO05D006056 4.0e-19 99.8 265 30.2
THA.LOC104801571 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.9e-17 93.6 148 36.5
EL10As5g23540 Beta vulgaris HOM05D004590 ORTHO05D006056 1.4e-16 91.3 109 45.0
SGA_v2.0_scaffold198G41121 Striga asiatica HOM05D004590 ORTHO05D006056 4.1e-16 89.7 159 41.5
Lalb_Chr21g0309621 Lupinus albus HOM05D004590 ORTHO05D006056 1.7e-14 84.3 157 39.5
FAN18G1107 Fragaria x ananassa HOM05D004590 ORTHO05D006056 9.6e-13 78.6 71 52.1
Hma1.2p1_0408F.1_g146640 Hydrangea macrophylla HOM05D004590 ORTHO05D006056 5.4e-08 62.8 67 50.7
SalBow3G0261 Salvia bowleyana HOM05D004590 ORTHO05D006056 8.7e-06 55.5 255 27.1


User provided reference genes

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