Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 6.9e-112 407.5 238 100.0
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 5.5e-101 371.3 233 93.6
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.0e-99 367.1 238 92.0
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 2.4e-96 355.9 232 83.2
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 2.6e-95 352.4 239 82.0
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.3e-94 350.1 235 89.4
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 3.9e-91 338.6 235 87.7
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 1.6e-79 300.1 240 71.7
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 3.8e-78 295.4 240 71.2
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 1.7e-73 280.0 239 69.5
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 6.3e-73 278.1 239 68.2
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 3.6e-68 262.3 240 65.8
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 3.0e-67 259.2 239 64.9
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 9.8e-66 254.2 227 67.4
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 1.1e-64 250.8 237 63.7
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 4.7e-60 235.3 238 58.0
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 3.3e-53 212.6 145 81.4
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 1.6e-52 210.3 233 55.8
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 9.2e-48 194.5 240 52.9
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 3.3e-45 186.0 240 49.6
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 2.8e-44 183.0 235 50.6
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 4.7e-44 182.2 236 52.5
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 3.1e-43 179.5 240 49.2
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 3.1e-43 179.5 238 47.1
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 5.2e-43 178.7 237 49.4
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 8.3e-41 171.4 237 45.1
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 8.3e-41 171.4 235 49.4
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 1.1e-40 171.0 239 47.7
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.9e-40 170.2 235 50.6
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 3.5e-39 166.0 233 46.4
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 4.6e-39 165.6 236 47.0
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 3.0e-38 162.9 237 45.1
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 3.9e-38 162.5 233 46.4
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 8.6e-38 161.4 233 47.2
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-37 161.0 238 49.6
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.9e-37 160.2 241 48.5
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 5.6e-37 158.7 235 48.5
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.6e-37 158.7 235 48.5
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.6e-37 158.7 235 48.5
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 7.3e-37 158.3 236 47.0
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.1e-36 156.8 238 50.8
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 2.8e-36 156.4 240 45.8
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 4.7e-36 155.6 238 44.5
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.4e-35 154.1 244 46.7
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.6e-34 149.8 246 48.8
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 3.4e-34 149.4 251 42.2
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.4e-34 149.1 234 52.1
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 5.8e-34 148.7 234 45.3
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 9.9e-34 147.9 237 41.8
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.7e-33 147.1 237 41.8
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 2.9e-33 146.4 233 42.1
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 3.8e-33 146.0 244 40.2
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 4.9e-33 145.6 241 42.3
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 4.9e-33 145.6 238 44.1
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 4.9e-33 145.6 235 42.6
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 1.4e-32 144.1 237 40.9
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 1.9e-32 143.7 238 43.3
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 2.4e-32 143.3 248 51.6
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 9.2e-32 141.4 232 40.9
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 9.2e-32 141.4 236 43.6
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.6e-31 140.6 283 38.5
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 3.5e-31 139.4 243 42.4
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 4.6e-31 139.0 238 40.8
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 6.0e-31 138.7 232 42.2
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 2.3e-30 136.7 242 41.3
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 1.9e-29 133.7 243 41.2
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 2.5e-29 133.3 233 39.9
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 2.5e-29 133.3 249 40.6
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 2.5e-29 133.3 233 41.2
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 2.5e-29 133.3 233 42.9
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 2.1e-28 130.2 233 44.6
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 3.6e-28 129.4 237 42.2
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 3.6e-28 129.4 138 53.6
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 1.4e-27 127.5 241 41.5
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 6.9e-27 125.2 232 44.4
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 9.0e-27 124.8 235 47.2
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 9.9e-26 121.3 229 41.5
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 1.7e-25 120.6 235 46.8
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 2.9e-25 119.8 223 38.6
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 2.9e-25 119.8 235 42.6
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 1.4e-24 117.5 241 39.0
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 2.4e-24 116.7 236 39.4
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 5.4e-24 115.5 244 37.7
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 7.1e-24 115.2 235 38.3
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 9.3e-24 114.8 237 41.4
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 1.2e-23 114.4 199 41.7
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 1.2e-23 114.4 238 38.2
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 3.5e-23 112.8 143 51.0
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.3e-22 110.9 236 39.8
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 8.7e-22 108.2 134 58.2
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 1.1e-21 107.8 240 43.3
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 2.5e-21 106.7 113 55.8
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 5.6e-21 105.5 238 35.7
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 1.1e-19 101.3 152 46.1
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.4e-19 100.9 353 31.2
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 2.4e-19 100.1 238 39.5
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.1e-19 99.8 232 35.3
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 7.6e-18 95.1 236 33.9
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 7.6e-18 95.1 131 49.6
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 2.9e-17 93.2 137 47.4
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 6.4e-17 92.0 120 48.3
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 3.5e-15 86.3 154 40.3
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 3.5e-15 86.3 78 59.0
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 4.6e-15 85.9 65 64.6
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 4.6e-15 85.9 106 50.0
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 2.3e-14 83.6 60 66.7
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 5.1e-14 82.4 78 52.6
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 8.7e-14 81.6 242 30.6
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 1.5e-13 80.9 149 38.3
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 1.9e-13 80.5 69 58.0
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 2.1e-12 77.0 233 32.6
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.1e-11 74.7 130 45.4
A05p05540 Brassica napus HOM05D006684 ORTHO05D008443 6.9e-11 72.0 73 57.5
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 9.0e-11 71.6 234 29.5
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 9.0e-11 71.6 157 37.6
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 2.6e-10 70.1 245 32.7
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 2.6e-10 70.1 89 47.2
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 2.1e-07 60.5 93 47.3
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 4.6e-07 59.3 130 42.3


User provided reference genes

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