Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29406 Brassica carinata HOM05D011438 ORTHO05D000862 3.0e-78 295.0 145 100.0
BcaC02g07122 Brassica carinata HOM05D011438 ORTHO05D000862 1.1e-40 170.2 164 57.3
C04p71320 Brassica napus HOM05D011438 ORTHO05D000862 1.1e-40 170.2 164 57.3
BolC4t28635H Brassica oleracea HOM05D011438 ORTHO05D000862 7.3e-40 167.5 164 56.7
A04p33550 Brassica napus HOM05D011438 ORTHO05D000862 4.2e-35 151.8 156 54.5
BraA04t18817Z Brassica rapa HOM05D011438 ORTHO05D000862 4.2e-35 151.8 156 54.5
BcaB07g30486 Brassica carinata HOM05D011438 ORTHO05D000862 1.3e-25 120.2 121 47.9
BraA05t19478Z Brassica rapa HOM05D011438 ORTHO05D000862 1.5e-24 116.7 132 49.2
A05p05040 Brassica napus HOM05D011438 ORTHO05D000862 2.5e-24 115.9 132 48.5
Sp4g27000 Schrenkiella parvula HOM05D011438 ORTHO05D000862 2.5e-24 115.9 89 64.0
C04p05880 Brassica napus HOM05D011438 ORTHO05D000862 2.8e-23 112.5 131 48.1
BolC4t22218H Brassica oleracea HOM05D011438 ORTHO05D000862 2.8e-23 112.5 131 48.1
AL4G44030 Arabidopsis lyrata HOM05D011438 ORTHO05D000862 1.5e-21 106.7 119 50.4
AT2G44925 Arabidopsis thaliana HOM05D011438 ORTHO05D000862 4.9e-20 101.7 111 51.4
CsaV3_3G007510 Cucumis sativus L. HOM05D001119 ORTHO05D000862 1.3e-17 93.6 120 41.7
Carub.0004s2752 Capsella rubella HOM05D063755 ORTHO05D000862 1.8e-17 93.2 121 47.1
MELO3C005973.2 Cucumis melo HOM05D001119 ORTHO05D000862 3.0e-17 92.4 120 40.8
Prupe.7G081400 Prunus persica HOM05D001119 ORTHO05D000862 8.7e-17 90.9 117 45.3
ClCG05G000350 Citrullus lanatus HOM05D001119 ORTHO05D000862 1.9e-16 89.7 120 40.0
CARHR224150 Cardamine hirsuta HOM05D011438 ORTHO05D000862 2.5e-16 89.4 116 46.6
Dinv44083 Davidia involucrata HOM05D001119 ORTHO05D000862 1.3e-15 87.0 105 39.0
Sed0023743 Sechium edule HOM05D001119 ORTHO05D000862 2.2e-15 86.3 113 38.9
Haze_02761 Corylus avellana HOM05D001119 ORTHO05D000862 4.8e-15 85.1 102 44.1
THA.LOC104817197 Tarenaya hassleriana HOM05D001119 ORTHO05D000862 1.1e-14 84.0 111 46.8
QL04p033568 Quercus lobata HOM05D001119 ORTHO05D000862 6.9e-14 81.3 94 39.4
Sed0016988 Sechium edule HOM05D001119 ORTHO05D000862 6.9e-14 81.3 113 37.2
Manes.01G271400 Manihot esculenta HOM05D001119 ORTHO05D000862 1.2e-13 80.5 103 38.8
Cfa011109 Carpinus fangiana HOM05D001119 ORTHO05D000862 3.4e-13 79.0 100 43.0
Lj7A541G77 Lonicera japonica HOM05D001119 ORTHO05D000862 4.5e-13 78.6 91 37.4
Ciclev10024012m.g Citrus clementina HOM05D001119 ORTHO05D000862 5.9e-13 78.2 114 37.7
FAN10G2844 Fragaria x ananassa HOM05D001119 ORTHO05D000862 5.9e-13 78.2 110 34.5
FvH4_7g09600 Fragaria vesca HOM05D001119 ORTHO05D000862 1.0e-12 77.4 110 34.5
RcHm_v2.0_Chr1g0346521 Rosa chinensis HOM05D001119 ORTHO05D000862 1.3e-12 77.0 93 38.7
Thecc.01G389200 Theobroma cacao HOM05D001119 ORTHO05D000862 1.3e-12 77.0 108 40.7
Thhalv10001735m.g Eutrema salsugineum HOM05D011438 ORTHO05D000862 2.2e-12 76.3 79 57.0
MD07G1100200 Malus domestica HOM05D001119 ORTHO05D000862 2.2e-12 76.3 109 37.6
Sed0019479 Sechium edule HOM05D001119 ORTHO05D000862 2.2e-12 76.3 108 36.1
Potri.014G054900 Populus trichocarpa HOM05D001119 ORTHO05D000862 3.8e-12 75.5 109 41.3
FAN03G1298 Fragaria x ananassa HOM05D001119 ORTHO05D000862 5.0e-12 75.1 110 34.5
BcaC02g12261 Brassica carinata HOM05D011438 ORTHO05D000862 1.4e-11 73.6 80 50.0
FAN10G3081 Fragaria x ananassa HOM05D001119 ORTHO05D000862 1.4e-11 73.6 110 33.6
HPP92_025614 Vanilla planifolia HOM05D001119 ORTHO05D000862 4.2e-11 72.0 107 36.4
Rhsim01G0137200 Rhododendron simsii HOM05D001119 ORTHO05D000862 1.2e-10 70.5 98 35.7
CiPaw.13G029000 Carya illinoinensis HOM05D001119 ORTHO05D000862 3.6e-10 68.9 90 42.2
Oeu051902.1 Olea europaea HOM05D001119 ORTHO05D000862 1.0e-09 67.4 115 36.5
Manes.10G041300 Manihot esculenta HOM05D001119 ORTHO05D000862 1.4e-09 67.0 102 29.4
TWI34G1834 Tripterygium wilfordii HOM05D001119 ORTHO05D000862 1.8e-09 66.6 112 29.5
Atru.chr3.3728 Acer truncatum HOM05D001119 ORTHO05D000862 3.9e-09 65.5 89 39.3
TWI23G0964 Tripterygium wilfordii HOM05D001119 ORTHO05D000862 3.9e-09 65.5 101 35.6
Ciclev10029977m.g Citrus clementina HOM05D001119 ORTHO05D000862 5.1e-09 65.1 97 37.1
Actinidia39661 Actinidia chinensis HOM05D001119 ORTHO05D000862 6.7e-09 64.7 122 34.4
CSS0011228 Camellia sinensis var. sinensis HOM05D001119 ORTHO05D000862 6.7e-09 64.7 92 35.9
CSS0035501 Camellia sinensis var. sinensis HOM05D001119 ORTHO05D000862 6.7e-09 64.7 92 35.9
Ciclev10010600m.g Citrus clementina HOM05D001119 ORTHO05D000862 6.7e-09 64.7 103 32.0
Actinidia30219 Actinidia chinensis HOM05D001119 ORTHO05D000862 1.1e-08 63.9 115 33.9
Gohir.D08G068950 Gossypium hirsutum HOM05D001119 ORTHO05D000862 1.5e-08 63.5 123 33.3
Gorai.004G072300 Gossypium raimondii HOM05D001119 ORTHO05D000862 1.5e-08 63.5 121 33.9
Sabra14G0040600 Salix brachista HOM05D001119 ORTHO05D000862 1.5e-08 63.5 102 37.3
Lalb_Chr13g0299451 Lupinus albus HOM05D001119 ORTHO05D000862 2.0e-08 63.2 93 33.3
PSO339G3271 Papaver somniferum HOM05D001119 ORTHO05D000862 2.0e-08 63.2 100 31.0
PSO017G2543 Papaver somniferum HOM05D001119 ORTHO05D000862 2.5e-08 62.8 119 33.6
CDE07G0222 Ceratophyllum demersum HOM05D001119 ORTHO05D000862 3.3e-08 62.4 122 32.0
Haze_26011 Corylus avellana HOM05D001119 ORTHO05D000862 3.3e-08 62.4 100 32.0
Dinv21658 Davidia involucrata HOM05D001119 ORTHO05D000862 3.3e-08 62.4 109 30.3
CDE09G1145 Ceratophyllum demersum HOM05D001119 ORTHO05D000862 4.3e-08 62.0 106 34.0
Os07g0274300 Oryza sativa ssp. japonica HOM05D001119 ORTHO05D000862 4.3e-08 62.0 106 33.0
Rhsim05G0007600 Rhododendron simsii HOM05D001119 ORTHO05D000862 4.3e-08 62.0 112 33.0
Aa31LG10G4670 Aethionema arabicum HOM05D001119 ORTHO05D000862 5.7e-08 61.6 111 30.6
Cfa002990 Carpinus fangiana HOM05D001119 ORTHO05D000862 5.7e-08 61.6 100 32.0
COL.COLO4_12441 Corchorus olitorius HOM05D001119 ORTHO05D000862 5.7e-08 61.6 120 37.5
Zm00001eb197470 Zea mays HOM05D001119 ORTHO05D000862 5.7e-08 61.6 97 32.0
TWI15G0565 Tripterygium wilfordii HOM05D001119 ORTHO05D000862 7.4e-08 61.2 110 31.8
COL.COLO4_18099 Corchorus olitorius HOM05D001119 ORTHO05D000862 9.7e-08 60.8 93 32.3
Lj4C912T8 Lonicera japonica HOM05D001119 ORTHO05D000862 9.7e-08 60.8 106 31.1
Lj4g0012074 Lotus japonicus HOM05D001119 ORTHO05D000862 9.7e-08 60.8 111 33.3
Sc18g0002540 Simmondsia chinensis HOM05D001119 ORTHO05D000862 9.7e-08 60.8 126 25.4
Zm00001eb023180 Zea mays HOM05D001119 ORTHO05D000862 9.7e-08 60.8 109 32.1
Glyma.17G049300 Glycine max HOM05D001119 ORTHO05D000862 1.3e-07 60.5 107 29.0
Lalb_Chr12g0200141 Lupinus albus HOM05D001119 ORTHO05D000862 1.3e-07 60.5 94 30.9
QL11p000739 Quercus lobata HOM05D001119 ORTHO05D000862 1.3e-07 60.5 99 31.3
Cc06_g12150 Coffea canephora HOM05D001119 ORTHO05D000862 1.7e-07 60.1 92 30.4
Atru.chr7.1702 Acer truncatum HOM05D001119 ORTHO05D000862 2.2e-07 59.7 89 31.5
Dinv42392 Davidia involucrata HOM05D001119 ORTHO05D000862 2.2e-07 59.7 100 31.0
Gohir.A08G059750 Gossypium hirsutum HOM05D001119 ORTHO05D000862 2.2e-07 59.7 121 32.2
Zm00001eb391160 Zea mays HOM05D001119 ORTHO05D000862 2.2e-07 59.7 96 33.3
CsaV3_1G041020 Cucumis sativus L. HOM05D001119 ORTHO05D000862 2.8e-07 59.3 92 31.5
Dinv31363 Davidia involucrata HOM05D001119 ORTHO05D000862 2.8e-07 59.3 118 26.3
Potri.008G045000 Populus trichocarpa HOM05D001119 ORTHO05D000862 2.8e-07 59.3 127 26.0
PGR142G2693 Punica granatum HOM05D001119 ORTHO05D000862 2.8e-07 59.3 104 29.8
Rhsim03G0122400 Rhododendron simsii HOM05D001119 ORTHO05D000862 2.8e-07 59.3 107 29.9
Aqoxy3G02875 Aquilegia oxysepala HOM05D001119 ORTHO05D000862 3.7e-07 58.9 102 29.4
Nn3g19893 Nelumbo nucifera HOM05D001119 ORTHO05D000862 3.7e-07 58.9 109 28.4
PSO170G1459 Papaver somniferum HOM05D001119 ORTHO05D000862 3.7e-07 58.9 86 31.4
Peaxi162Scf00127g00193 Petunia axillaris HOM05D001119 ORTHO05D000862 3.7e-07 58.9 93 29.0
GSVIVG01016349001 Vitis vinifera HOM05D001119 ORTHO05D000862 3.7e-07 58.9 120 26.7
Cpa.g.sc1.267 Carica papaya HOM05D001119 ORTHO05D000862 4.8e-07 58.5 105 28.6
Cpa.g.sc28.41 Carica papaya HOM05D001119 ORTHO05D000862 4.8e-07 58.5 94 29.8
TAR633G1771 Trochodendron aralioides HOM05D001119 ORTHO05D000862 4.8e-07 58.5 94 30.9
HPP92_002723 Vanilla planifolia HOM05D001119 ORTHO05D000862 4.8e-07 58.5 90 35.6
AT5G13620 Arabidopsis thaliana HOM05D001119 ORTHO05D000862 6.3e-07 58.2 96 29.2
Ca_21322_v3 Cicer arietinum L. HOM05D001119 ORTHO05D000862 6.3e-07 58.2 102 32.4
MELO3C015520.2 Cucumis melo HOM05D001119 ORTHO05D000862 6.3e-07 58.2 92 30.4
Thecc.09G077000 Theobroma cacao HOM05D001119 ORTHO05D000862 6.3e-07 58.2 100 28.0
Zm00001eb420590 Zea mays HOM05D001119 ORTHO05D000862 6.3e-07 58.2 88 33.0
ClCG03G015090 Citrullus lanatus HOM05D001119 ORTHO05D000862 8.2e-07 57.8 90 30.0
Cc08_g12150 Coffea canephora HOM05D001119 ORTHO05D000862 8.2e-07 57.8 107 29.9
Duzib187G1631 Durio zibethinus HOM05D001119 ORTHO05D000862 8.2e-07 57.8 92 30.4
Migut.L01565 Erythranthe guttata HOM05D001119 ORTHO05D000862 8.2e-07 57.8 86 31.4
PSO384G0338 Papaver somniferum HOM05D001119 ORTHO05D000862 8.2e-07 57.8 100 29.0
Sabra08G0031200 Salix brachista HOM05D001119 ORTHO05D000862 8.2e-07 57.8 113 26.5
THA.LOC104799361 Tarenaya hassleriana HOM05D001119 ORTHO05D000862 8.2e-07 57.8 100 32.0
GSVIVG01015084001 Vitis vinifera HOM05D001119 ORTHO05D000862 8.2e-07 57.8 123 28.5
CANSAT56G3826 Cannabis sativa HOM05D001119 ORTHO05D000862 1.1e-06 57.4 92 32.6
Carub.0763s0001 Capsella rubella HOM05D063755 ORTHO05D000862 1.1e-06 57.4 77 44.2
Migut.F01793 Erythranthe guttata HOM05D001119 ORTHO05D000862 1.1e-06 57.4 98 27.6
Thhalv10015793m.g Eutrema salsugineum HOM05D001119 ORTHO05D000862 1.1e-06 57.4 99 29.3
Nn2g10643 Nelumbo nucifera HOM05D001119 ORTHO05D000862 1.1e-06 57.4 94 30.9
Nn3g19892 Nelumbo nucifera HOM05D001119 ORTHO05D000862 1.1e-06 57.4 109 28.4
PSO782G4752 Papaver somniferum HOM05D001119 ORTHO05D000862 1.1e-06 57.4 86 31.4
Prupe.2G219300 Prunus persica HOM05D001119 ORTHO05D000862 1.1e-06 57.4 110 24.5
RcHm_v2.0_Chr5g0048891 Rosa chinensis HOM05D001119 ORTHO05D000862 1.1e-06 57.4 93 25.8
vmacro17201 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.1e-06 57.4 93 32.3
CiPaw.03G206700 Carya illinoinensis HOM05D001119 ORTHO05D000862 1.4e-06 57.0 97 28.9
Lalb_Chr04g0252291 Lupinus albus HOM05D001119 ORTHO05D000862 1.4e-06 57.0 94 26.6
Solyc12g020130.1 Solanum lycopersicum HOM05D001119 ORTHO05D000862 1.4e-06 57.0 106 28.3
MELO3C025499.2 Cucumis melo HOM05D001119 ORTHO05D000862 1.8e-06 56.6 93 30.1
Medtr4g125350 Medicago truncatula HOM05D001119 ORTHO05D000862 1.8e-06 56.6 89 31.5
Nitab4.5_0002562g0010 Nicotiana tabacum HOM05D001119 ORTHO05D000862 1.8e-06 56.6 93 30.1
Os10g0561000 Oryza sativa ssp. japonica HOM05D001119 ORTHO05D000862 1.8e-06 56.6 94 30.9
PGR142G3585 Punica granatum HOM05D001119 ORTHO05D000862 1.8e-06 56.6 100 28.0
Ah.07g208510 Amaranthus hybridus HOM05D001119 ORTHO05D000862 2.4e-06 56.2 87 26.4
ATR0375G001 Amborella trichopoda HOM05D001119 ORTHO05D000862 2.4e-06 56.2 91 31.9
AL6G24230 Arabidopsis lyrata HOM05D001119 ORTHO05D000862 2.4e-06 56.2 96 27.1
FAN01G1664 Fragaria x ananassa HOM05D001119 ORTHO05D000862 2.4e-06 56.2 97 30.9
FAN06G4087 Fragaria x ananassa HOM05D001119 ORTHO05D000862 2.4e-06 56.2 97 30.9
FAN10G0839 Fragaria x ananassa HOM05D001119 ORTHO05D000862 2.4e-06 56.2 95 31.6
Zm00001eb197450 Zea mays HOM05D001119 ORTHO05D000862 2.4e-06 56.2 97 28.9
FvH4_1g08631 Fragaria vesca HOM05D001119 ORTHO05D000862 3.1e-06 55.8 117 27.4
Aqoxy2G03246 Aquilegia oxysepala HOM05D001119 ORTHO05D000862 4.1e-06 55.5 104 30.8
EL10Ac3g05802 Beta vulgaris HOM05D001119 ORTHO05D000862 4.1e-06 55.5 107 25.2
ClCG09G020410 Citrullus lanatus HOM05D001119 ORTHO05D000862 4.1e-06 55.5 119 24.4
CsaV3_5G026010 Cucumis sativus L. HOM05D001119 ORTHO05D000862 4.1e-06 55.5 96 30.2
Duzib128G1698 Durio zibethinus HOM05D001119 ORTHO05D000862 4.1e-06 55.5 95 28.4
Nn2g14751 Nelumbo nucifera HOM05D001119 ORTHO05D000862 4.1e-06 55.5 113 28.3
SGA_v2.0_scaffold153G36930 Striga asiatica HOM05D049034 ORTHO05D000862 4.1e-06 55.5 129 32.6
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 4.1e-06 55.5 93 31.2
arahy.Tifrunner.gnm1.ann1.ASV59L Arachis hypogaea HOM05D001119 ORTHO05D000862 5.3e-06 55.1 106 28.3
EL10Ac3g05803 Beta vulgaris HOM05D001119 ORTHO05D000862 5.3e-06 55.1 115 21.7
A02p02070 Brassica napus HOM05D001119 ORTHO05D000862 5.3e-06 55.1 96 28.1
BraA02t05179Z Brassica rapa HOM05D001119 ORTHO05D000862 5.3e-06 55.1 96 28.1
CDE02G4634 Ceratophyllum demersum HOM05D001119 ORTHO05D000862 5.3e-06 55.1 105 27.6
FvH4_2g11491 Fragaria vesca HOM05D001119 ORTHO05D000862 5.3e-06 55.1 115 25.2
FAN24G2291 Fragaria x ananassa HOM05D001119 ORTHO05D000862 5.3e-06 55.1 115 25.2
FAN26G0450 Fragaria x ananassa HOM05D001119 ORTHO05D000862 5.3e-06 55.1 119 27.7
FAN26G2421 Fragaria x ananassa HOM05D001119 ORTHO05D000862 5.3e-06 55.1 117 27.4
MD07G1180400 Malus domestica HOM05D001119 ORTHO05D000862 5.3e-06 55.1 93 25.8
RcHm_v2.0_Chr5g0048921 Rosa chinensis HOM05D001119 ORTHO05D000862 5.3e-06 55.1 93 25.8
PGSC0003DMG400046847 Solanum tuberosum HOM05D001119 ORTHO05D000862 5.3e-06 55.1 93 28.0
TAR633G2459 Trochodendron aralioides HOM05D001119 ORTHO05D000862 5.3e-06 55.1 110 25.5
AUR62016111 Chenopodium quinoa HOM05D001119 ORTHO05D000862 6.9e-06 54.7 132 22.0
FvH4_7g20310 Fragaria vesca HOM05D001119 ORTHO05D000862 6.9e-06 54.7 95 31.6
Gohir.D08G186900 Gossypium hirsutum HOM05D001119 ORTHO05D000862 6.9e-06 54.7 123 27.6
Gorai.004G196600 Gossypium raimondii HOM05D001119 ORTHO05D000862 6.9e-06 54.7 123 27.6
Prupe.2G219700 Prunus persica HOM05D001119 ORTHO05D000862 6.9e-06 54.7 112 25.0
TWI38G1075 Tripterygium wilfordii HOM05D001119 ORTHO05D000862 6.9e-06 54.7 114 28.1
Zm00001eb304880 Zea mays HOM05D001119 ORTHO05D000862 6.9e-06 54.7 104 30.8
Atru.chr12.627 Acer truncatum HOM05D001119 ORTHO05D000862 9.1e-06 54.3 111 24.3
BcaNung06130 Brassica carinata HOM05D001119 ORTHO05D000862 9.1e-06 54.3 93 29.0
C02p06310 Brassica napus HOM05D001119 ORTHO05D000862 9.1e-06 54.3 93 29.0
BolC2t06574H Brassica oleracea HOM05D001119 ORTHO05D000862 9.1e-06 54.3 93 29.0
Carub.0006s1178 Capsella rubella HOM05D001119 ORTHO05D000862 9.1e-06 54.3 96 27.1
Ca_27106_v3 Cicer arietinum L. HOM05D001119 ORTHO05D000862 9.1e-06 54.3 90 31.1
Ciclev10033619m.g Citrus clementina HOM05D001119 ORTHO05D000862 9.1e-06 54.3 88 28.4
Duzib150G1609 Durio zibethinus HOM05D001119 ORTHO05D000862 9.1e-06 54.3 99 28.3
TAR383G0586 Trochodendron aralioides HOM05D001119 ORTHO05D000862 9.1e-06 54.3 95 30.5


User provided reference genes

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