Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.8e-78 295.8 149 100.0
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 1.8e-65 252.7 130 96.2
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.3e-63 246.5 128 94.5
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.3e-63 246.5 128 94.5
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.3e-63 246.5 128 94.5
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.7e-63 246.1 129 93.8
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.8e-63 245.4 128 93.8
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.1e-62 243.4 129 93.0
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.4e-62 243.0 129 93.0
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 1.8e-62 242.7 128 92.2
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 9.2e-62 240.4 129 92.2
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 3.8e-60 235.0 131 90.8
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 6.6e-60 234.2 130 87.7
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.2e-56 223.4 131 84.7
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 2.0e-56 222.6 129 85.3
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 2.6e-56 222.2 130 83.8
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 1.3e-55 219.9 130 82.3
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.1e-54 216.9 130 82.3
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 2.0e-53 212.6 135 81.5
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 8.0e-50 200.7 130 75.4
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 8.9e-49 197.2 130 73.8
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 2.6e-48 195.7 129 76.0
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.3e-47 193.4 131 73.3
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.1e-43 180.3 129 69.0
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 1.1e-43 180.3 129 69.0
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.6e-43 177.9 130 68.5
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 5.6e-43 177.9 131 69.5
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 2.1e-42 176.0 129 69.0
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 3.6e-42 175.3 130 67.7
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 4.7e-42 174.9 130 66.9
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 8.1e-42 174.1 130 67.7
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 8.1e-42 174.1 131 69.5
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 8.1e-42 174.1 144 61.1
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 1.1e-41 173.7 130 67.7
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 1.4e-41 173.3 130 66.9
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 2.3e-41 172.6 130 66.9
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 3.1e-41 172.2 130 66.9
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 4.0e-41 171.8 130 67.7
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 4.0e-41 171.8 132 69.7
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 6.8e-41 171.0 131 67.9
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 6.8e-41 171.0 131 64.9
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.8e-41 171.0 130 66.2
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 6.8e-41 171.0 129 63.6
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.9e-41 170.6 131 67.9
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 1.2e-40 170.2 130 66.9
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.2e-40 170.2 130 66.2
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 1.2e-40 170.2 130 65.4
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 3.4e-40 168.7 131 67.2
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 4.4e-40 168.3 129 66.7
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 5.8e-40 167.9 129 66.7
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 5.8e-40 167.9 129 62.8
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 7.5e-40 167.5 132 62.9
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 9.9e-40 167.2 129 65.9
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.7e-39 166.4 130 63.1
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 2.2e-39 166.0 129 65.9
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 2.9e-39 165.6 130 65.4
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 2.9e-39 165.6 132 68.2
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 8.3e-39 164.1 131 63.4
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 1.4e-38 163.3 132 62.9
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 1.9e-38 162.9 131 64.1
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.4e-38 162.5 132 65.2
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 3.2e-38 162.2 131 64.9
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.2e-38 162.2 131 64.9
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 5.4e-38 161.4 129 62.8
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 1.2e-37 160.2 129 62.8
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.2e-37 160.2 131 64.9
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.6e-37 159.8 132 62.1
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 1.6e-37 159.8 131 65.6
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.7e-37 159.1 131 64.9
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 2.7e-37 159.1 130 60.8
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 3.5e-37 158.7 132 63.6
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.5e-37 158.7 131 64.1
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 3.5e-37 158.7 129 61.2
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 6.0e-37 157.9 133 61.7
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 6.0e-37 157.9 131 64.1
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 7.8e-37 157.5 118 65.3
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 7.8e-37 157.5 129 62.0
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.0e-36 157.1 129 61.2
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 1.0e-36 157.1 129 60.5
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 5.1e-36 154.8 130 59.2
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.9e-35 152.9 129 57.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 2.5e-35 152.5 130 60.0
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 2.5e-35 152.5 130 60.0
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 2.5e-35 152.5 130 60.0
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 4.3e-35 151.8 129 61.2
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 4.3e-35 151.8 133 60.9
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 5.6e-35 151.4 129 59.7
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 9.5e-35 150.6 131 64.1
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 9.5e-35 150.6 132 56.1
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 1.2e-34 150.2 128 59.4
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 1.2e-34 150.2 129 59.7
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 1.2e-34 150.2 130 60.0
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.8e-34 149.1 131 62.6
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 6.2e-34 147.9 126 62.7
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 6.2e-34 147.9 129 60.5
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 8.1e-34 147.5 124 61.3
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.8e-33 146.4 129 58.9
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 2.4e-33 146.0 109 67.9
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 3.1e-33 145.6 129 56.6
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 1.2e-32 143.7 130 59.2
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.5e-32 143.3 131 58.0
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 1.5e-32 143.3 129 57.4
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.5e-32 143.3 119 60.5
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 2.0e-32 142.9 129 57.4
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 2.6e-32 142.5 132 58.3
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 2.6e-32 142.5 160 50.0
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 1.7e-31 139.8 129 56.6
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 8.4e-31 137.5 131 57.3
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.9e-30 136.3 145 49.7
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 4.1e-30 135.2 131 54.2
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 9.2e-30 134.0 97 67.0
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.6e-29 133.3 138 52.2
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 3.5e-29 132.1 135 52.6
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 4.6e-29 131.7 120 60.8
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 5.1e-28 128.3 148 49.3
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 1.1e-27 127.1 111 64.9
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 3.3e-27 125.6 121 56.2
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.2e-26 123.6 94 63.8
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 2.8e-26 122.5 99 60.6
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 4.7e-26 121.7 114 56.1
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.8e-25 119.8 92 66.3
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 2.4e-25 119.4 81 72.8
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 9.9e-24 114.0 90 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 2.9e-23 112.5 111 52.3
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 6.4e-23 111.3 80 67.5
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 4.2e-22 108.6 80 63.8
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 1.2e-21 107.1 92 56.5
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 2.7e-21 105.9 89 62.9
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.0e-20 104.0 80 57.5
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 1.5e-19 100.1 111 56.8
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.9e-19 99.8 114 47.4
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 5.6e-19 98.2 61 75.4
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 1.3e-18 97.1 66 74.2
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 4.8e-18 95.1 89 57.3
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.1e-17 94.0 121 47.1
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 3.4e-16 89.0 66 68.2
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 1.6e-13 80.1 72 62.5
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 1.8e-12 76.6 57 66.7
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 3.4e-08 62.4 40 75.0
Cre16.g673729 Chlamydomonas reinhardtii HOM05D002686 ORTHO05D006568 8.4e-07 57.8 95 42.1
PRCOL_00004840 Prasinoderma coloniale HOM05D002686 ORTHO05D003222 1.4e-06 57.0 102 35.3
HPP92_019287 Vanilla planifolia HOM05D002686 ORTHO05D003222 3.2e-06 55.8 131 34.4
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 4.2e-06 55.5 89 37.1


User provided reference genes

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