Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29362 Brassica carinata HOM05D007600 ORTHO05D009132 5.1e-128 461.1 229 100.0
A04p33230 Brassica napus HOM05D007600 ORTHO05D009132 2.0e-87 326.2 218 78.0
C04p70920 Brassica napus HOM05D007600 ORTHO05D009132 3.3e-87 325.5 218 77.5
BolC4t28592H Brassica oleracea HOM05D007600 ORTHO05D009132 3.3e-87 325.5 218 77.5
BraA04t18782Z Brassica rapa HOM05D007600 ORTHO05D009132 6.9e-85 317.8 218 76.6
Thhalv10001785m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 3.3e-50 202.6 238 50.0
Sp4g26250 Schrenkiella parvula HOM05D007600 ORTHO05D009132 2.1e-41 173.3 170 56.5
Sp6g26220 Schrenkiella parvula HOM05D007600 ORTHO05D009132 5.0e-35 152.1 267 37.5
BcaC04g18726 Brassica carinata HOM05D007600 ORTHO05D009132 5.6e-34 148.7 270 37.4
BolC9t58734H Brassica oleracea HOM05D007600 ORTHO05D009132 5.6e-34 148.7 270 37.4
CARHR194980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 3.6e-33 146.0 219 42.5
A10p21410 Brassica napus HOM05D007600 ORTHO05D009132 4.0e-32 142.5 273 37.4
C09p58890 Brassica napus HOM05D007600 ORTHO05D009132 4.0e-32 142.5 269 37.2
BcaB08g36708 Brassica carinata HOM05D007600 ORTHO05D009132 1.7e-30 137.1 259 37.1
BraA10t44204Z Brassica rapa HOM05D007600 ORTHO05D009132 1.1e-29 134.4 278 34.5
AL6G29290 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 1.4e-29 134.0 244 36.1
AT5G18090 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.9e-29 133.7 257 36.2
Carub.0006s1638 Capsella rubella HOM05D007600 ORTHO05D009132 2.4e-29 133.3 259 37.1
Thhalv10014143m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 3.2e-29 132.9 272 35.3
AT5G18000 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.2e-28 131.0 263 35.7
Thhalv10015705m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.1e-28 130.2 256 36.3
BcaB06g29360 Brassica carinata HOM05D001080 ORTHO05D014453 7.8e-28 128.3 69 94.2
CARHR195070 Cardamine hirsuta HOM05D007600 ORTHO05D009132 6.6e-27 125.2 271 36.2
Carub.0003s2950 Capsella rubella HOM05D007600 ORTHO05D009132 8.6e-27 124.8 262 33.6
AL6G29100 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 3.3e-26 122.9 272 32.7
AT2G35310 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.2e-25 120.9 245 37.1
Sp6g26290 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.6e-25 120.6 264 34.8
AL3G52300 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 5.2e-24 115.5 252 32.9
AT2G16210 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 2.0e-23 113.6 250 31.2
AL457U10020 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 3.4e-23 112.8 249 33.3
AT3G17010 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 7.6e-23 111.7 234 33.8
BolC2t06864H Brassica oleracea HOM05D007600 ORTHO05D009132 9.9e-23 111.3 258 35.7
BcaC03g13563 Brassica carinata HOM05D007600 ORTHO05D009132 2.2e-22 110.2 258 34.9
Thhalv10015617m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.2e-22 110.2 242 33.1
C02p09570 Brassica napus HOM05D007600 ORTHO05D009132 2.9e-22 109.8 258 34.9
AL6G20180 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 4.9e-22 109.0 247 32.4
BraA02t05424Z Brassica rapa HOM05D007600 ORTHO05D009132 6.4e-22 108.6 258 34.5
BcaB05g23317 Brassica carinata HOM05D007600 ORTHO05D009132 8.3e-22 108.2 263 33.1
CARHR291980 Cardamine hirsuta HOM05D007600 ORTHO05D009132 8.3e-22 108.2 272 32.7
Aa31LG8G13300 Aethionema arabicum HOM05D007600 ORTHO05D009132 1.4e-21 107.5 244 32.8
Thhalv10022138m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 4.1e-21 105.9 267 30.0
BcaC01g03796 Brassica carinata HOM05D007600 ORTHO05D009132 2.1e-20 103.6 230 33.5
BolC3t17132H Brassica oleracea HOM05D007600 ORTHO05D009132 2.1e-20 103.6 230 33.5
C03p48540 Brassica napus HOM05D007600 ORTHO05D009132 3.5e-20 102.8 230 33.5
BcaB06g25788 Brassica carinata HOM05D007600 ORTHO05D009132 6.0e-20 102.1 230 33.9
A02p04630 Brassica napus HOM05D007600 ORTHO05D009132 6.0e-20 102.1 258 33.3
Sp3g15230 Schrenkiella parvula HOM05D007600 ORTHO05D009132 1.0e-19 101.3 273 31.1
BcaB04g18922 Brassica carinata HOM05D007600 ORTHO05D009132 1.3e-19 100.9 267 31.5
A03p40010 Brassica napus HOM05D007600 ORTHO05D009132 1.3e-19 100.9 232 32.8
AL3G29990 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 2.3e-19 100.1 276 30.1
Carub.0006s1619 Capsella rubella HOM05D007600 ORTHO05D009132 3.0e-19 99.8 139 44.6
THA.LOC104819596 Tarenaya hassleriana HOM05D007600 ORTHO05D009132 3.0e-19 99.8 230 30.4
A03p40020 Brassica napus HOM05D007600 ORTHO05D009132 3.9e-19 99.4 250 30.0
A08p33850 Brassica napus HOM05D007600 ORTHO05D009132 3.9e-19 99.4 211 33.6
BraA08t35300Z Brassica rapa HOM05D007600 ORTHO05D009132 3.9e-19 99.4 211 33.6
Carub.0006s0819 Capsella rubella HOM05D007600 ORTHO05D009132 1.1e-18 97.8 256 32.4
BcaC07g38580 Brassica carinata HOM05D007600 ORTHO05D009132 1.9e-18 97.1 216 31.0
A05p32720 Brassica napus HOM05D007600 ORTHO05D009132 1.9e-18 97.1 258 29.5
BraA05t22094Z Brassica rapa HOM05D007600 ORTHO05D009132 2.5e-18 96.7 259 29.0
CARHR092260 Cardamine hirsuta HOM05D007600 ORTHO05D009132 2.5e-18 96.7 269 31.2
BolC8t49021H Brassica oleracea HOM05D007600 ORTHO05D009132 5.6e-18 95.5 212 32.5
BraA04t18175Z Brassica rapa HOM05D007600 ORTHO05D009132 9.6e-18 94.7 237 31.6
AT5G09780 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 1.6e-17 94.0 256 31.2
Aa31LG11G11510 Aethionema arabicum HOM05D007600 ORTHO05D009132 3.6e-17 92.8 210 31.9
BolC4t27889H Brassica oleracea HOM05D007600 ORTHO05D009132 4.7e-17 92.4 225 33.3
BraA03t13150Z Brassica rapa HOM05D007600 ORTHO05D009132 1.1e-16 91.3 249 28.1
BcaB06g25793 Brassica carinata HOM05D007600 ORTHO05D009132 1.8e-16 90.5 255 28.6
BcaB04g18921 Brassica carinata HOM05D007600 ORTHO05D009132 2.4e-16 90.1 232 31.5
CARHR106010 Cardamine hirsuta HOM05D007600 ORTHO05D009132 2.4e-16 90.1 224 30.4
Thhalv10022780m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.4e-16 90.1 269 30.9
BcaB04g18919 Brassica carinata HOM05D007600 ORTHO05D009132 3.1e-16 89.7 122 39.3
BolC5t33688H Brassica oleracea HOM05D007600 ORTHO05D009132 3.1e-16 89.7 133 36.8
BraA03t13149Z Brassica rapa HOM05D007600 ORTHO05D009132 3.1e-16 89.7 135 38.5
Sp1g09320 Schrenkiella parvula HOM05D007600 ORTHO05D009132 3.1e-16 89.7 127 37.8
Thhalv10023054m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 6.8e-16 88.6 205 33.2
C05p49420 Brassica napus HOM05D007600 ORTHO05D009132 8.9e-16 88.2 252 25.8
C03p48550 Brassica napus HOM05D007600 ORTHO05D009132 1.2e-15 87.8 251 28.3
BcaC07g38617 Brassica carinata HOM05D007600 ORTHO05D009132 2.6e-15 86.7 204 31.4
BcaB06g25789 Brassica carinata HOM05D007600 ORTHO05D009132 5.8e-15 85.5 129 36.4
BcaC01g03795 Brassica carinata HOM05D007600 ORTHO05D009132 5.8e-15 85.5 129 36.4
BolC3t17133H Brassica oleracea HOM05D007600 ORTHO05D009132 9.9e-15 84.7 273 27.1
C08p13860 Brassica napus HOM05D007600 ORTHO05D009132 3.2e-13 79.7 139 33.8
BcaC02g07741 Brassica carinata HOM05D007600 ORTHO05D009132 1.6e-12 77.4 122 36.1
Carub.0003s1676 Capsella rubella HOM05D007600 ORTHO05D009132 3.5e-12 76.3 241 27.4
BolC9t57576H Brassica oleracea HOM05D007600 ORTHO05D009132 1.3e-11 74.3 190 30.5
Duzib248G0282 Durio zibethinus HOM05D000823 ORTHO05D009132 1.7e-11 73.9 252 27.4
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 8.7e-11 71.6 232 28.9
FvH4_2g06970 Fragaria vesca HOM05D000823 ORTHO05D000088 5.6e-10 68.9 223 26.9
FAN24G2044 Fragaria x ananassa HOM05D000823 ORTHO05D000088 9.6e-10 68.2 223 26.5
Cfa004943 Carpinus fangiana HOM05D001372 ORTHO05D002010 1.4e-08 64.3 209 28.7
GSVIVG01031850001 Vitis vinifera HOM05D000823 ORTHO05D009132 1.8e-08 63.9 152 31.6
RcHm_v2.0_Chr6g0259331 Rosa chinensis HOM05D000823 ORTHO05D000088 2.4e-08 63.5 210 26.7
FAN15G3650 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.1e-08 63.2 223 26.0
RcHm_v2.0_Chr6g0259931 Rosa chinensis HOM05D000823 ORTHO05D000088 5.3e-08 62.4 218 25.2
AT5G46915 Arabidopsis thaliana HOM05D007600 ORTHO05D009132 6.9e-08 62.0 231 26.4
PSO017G3561 Papaver somniferum HOM05D000823 ORTHO05D000088 6.9e-08 62.0 166 24.7
AL4G43110 Arabidopsis lyrata HOM05D003545 ORTHO05D004720 2.6e-07 60.1 62 51.6
BcaC05g28837 Brassica carinata HOM05D007600 ORTHO05D009132 4.4e-07 59.3 185 24.9
Cc02_g18270 Coffea canephora HOM05D000823 ORTHO05D000088 5.8e-07 58.9 145 29.0
Sopen06g030580 Solanum pennellii HOM05D000823 ORTHO05D000088 9.9e-07 58.2 141 28.4
COL.COLO4_11739 Corchorus olitorius HOM05D000222 ORTHO05D000329 1.3e-06 57.8 202 28.2
PGSC0003DMG400005893 Solanum tuberosum HOM05D000823 ORTHO05D000088 1.3e-06 57.8 141 27.7
RcHm_v2.0_Chr6g0259781 Rosa chinensis HOM05D000823 ORTHO05D000088 2.2e-06 57.0 122 33.6
Solyc06g074160.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 2.9e-06 56.6 141 28.4
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 6.4e-06 55.5 225 26.7


User provided reference genes

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